Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00041 ATGTCATTCACAGGAACTCTTGATAAATGCACTGCTTGTGAAAAGACTGTTTATGTGGTTGATTTGTTAACTCTTGAAGGCATACCTTACCATAAAAATTGCTTCAAATGCAGTCACTGCAAGGGAACTCTCACGATGAGCACATACTCCTCAATGGATGGAGTCCTCTATTGCAGGCCACATTTTGAACAGCTCTTCAAGGAATCTGGCAACTTCAGCAAGAACTTCCAGAATGCAAAGTCTTCTGAGAAAAATGACCTGAACAGGACCCCAAGTAGACTCTCTTCCATGTTCAGTGGAACCTTGGACAAATGTTCGGTTTGCTCAAAAACAGTGTATCCACTGGAGAAGGTGACACTGGAGGGAGAATGCTTTCACAAGAGTTGCTTTAGGTGTGCTCATGCAGGGTGCCCACTGACACATTCTTCCTATGCTGCCTTAGATGGTGTCCTCTATTGTAGGCACCACTTTGCACAACTCTTCATGGAGAAAGGGAACTACAGCCATGTCCTCCAAGCTGCTGCTCACAAGAGGACTAATTCCTCTGATCCTTCCGAGATCCCCGACGAGACGGTGCAGCAGCCGGAGCCTGAGGCGGAGCCTGAAGCCGACAAGGAAGAGAAGAAAGCGGAGGATGAAACCGAGGAGGAGAAGAAAGAAAAAGAGGAAGAAGAAGAGGCTTCCTCTTGA 690 0.4696 MSFTGTLDKCTACEKTVYVVDLLTLEGIPYHKNCFKCSHCKGTLTMSTYSSMDGVLYCRPHFEQLFKESGNFSKNFQNAKSSEKNDLNRTPSRLSSMFSGTLDKCSVCSKTVYPLEKVTLEGECFHKSCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYSHVLQAAAHKRTNSSDPSEIPDETVQQPEPEAEPEADKEEKKAEDETEEEKKEKEEEEEASS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00041 229 PANTHER OS06G0237300 PROTEIN 1 205 IPR045268 GO:0051015
Aip02g00041 229 SMART lim_4 104 156 IPR001781 -
Aip02g00041 229 SMART lim_4 9 61 IPR001781 -
Aip02g00041 229 MobiDBLite consensus disorder prediction 174 189 - -
Aip02g00041 229 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Aip02g00041 229 Pfam LIM domain 105 160 IPR001781 -
Aip02g00041 229 Pfam LIM domain 10 65 IPR001781 -
Aip02g00041 229 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 205 - -
Aip02g00041 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Aip02g00041 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 131 170 - -
Aip02g00041 229 Coils Coil 202 229 - -
Aip02g00041 229 MobiDBLite consensus disorder prediction 174 229 - -
Aip02g00041 229 MobiDBLite consensus disorder prediction 198 216 - -
Aip02g00041 229 ProSiteProfiles LIM domain profile. 103 163 IPR001781 -
Aip02g00041 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Aip02g00041 229 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Aip02g00041 229 Gene3D Cysteine Rich Protein 5 72 - -
Aip02g00041 229 CDD LIM1_SF3 6 68 - -
Aip02g00041 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 97 130 - -
Aip02g00041 229 Gene3D Cysteine Rich Protein 101 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00041 Aip-Chr2 1130511 1131674 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Aip02g00041 LIM 1.8e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00041 - K09377 gmx:100800234 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00041 02 1130511 1131674 Aip02g00041 02 1130511 1131674 ECH
Aip04g02745 04 117591669 117594056 Aip02g00041 02 1130511 1131674 PCT