LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip02g00024	ATGCCCCCGGCATCTCCATCGCCGTCTCCGTCTCCGGCGTCGTCCCTCCTTGCCGGTGCATTCCACCTGCGGCACTTCTCGTCGGGCAACGCTGCTCGAGCGAGGGCGGCGGCGGCGGACAAGGAGCCATGGTGGAAGGAGTCCATGGAGCGGTTACGCAGCATCGGGATCTCTGCTCACATCGACTCCGGCAAGACAACTTTGACGGAGCGAGTGCTTTTCTACACTGGTCGTATCCACGAGATCCACGAGGTTCGGGGCAGAGACGGCGTCGGCGCCAAGATGGATTCCATGGACTTGGAGAGGGAGAAAGGTATCACTATCCAGTCTGCTGCTACTTACTGCTCTTGGAAAGACTATAAGATTAACATAATTGACACACCTGGTCACGTTGATTTCACCATTGAAGTTGAGAGGGCTTTGCGTGTCCTTGATGGTGCTATTCTTGTACTTTGTAGTGTTGGTGGTGTGCAAAGTCAGTCCATCACGGTTCCTCGCTTAGTTAGGATGCATTCTGATGAGATGGAGGAGAGACTTTTACCGATGGATCAGTTAAATACACAATGA	567	0.5362	MPPASPSPSPSPASSLLAGAFHLRHFSSGNAARARAAAADKEPWWKESMERLRSIGISAHIDSGKTTLTERVLFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATYCSWKDYKINIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVPRLVRMHSDEMEERLLPMDQLNTQ	188

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip02g00024	188	ProSitePatterns	Translational (tr)-type guanine nucleotide-binding (G) domain signature.	96	111	IPR031157	-
	Aip02g00024	188	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	47	171	IPR027417	-
	Aip02g00024	188	Gene3D	-	60	164	IPR027417	-
	Aip02g00024	188	ProSiteProfiles	Translational (tr)-type guanine nucleotide-binding (G) domain profile.	50	188	IPR000795	GO:0003924\|GO:0005525
	Aip02g00024	188	Pfam	Elongation factor Tu GTP binding domain	51	170	IPR000795	GO:0003924\|GO:0005525
	Aip02g00024	188	Gene3D	-	53	147	IPR027417	-
	Aip02g00024	188	PRINTS	GTP-binding elongation factor signature	139	150	IPR000795	GO:0003924\|GO:0005525
	Aip02g00024	188	PRINTS	GTP-binding elongation factor signature	123	133	IPR000795	GO:0003924\|GO:0005525
	Aip02g00024	188	PRINTS	GTP-binding elongation factor signature	54	67	IPR000795	GO:0003924\|GO:0005525
	Aip02g00024	188	PRINTS	GTP-binding elongation factor signature	103	111	IPR000795	GO:0003924\|GO:0005525
	Aip02g00024	188	TIGRFAM	small_GTP: small GTP-binding protein domain	53	168	IPR005225	GO:0005525
	Aip02g00024	188	PANTHER	ELONGATION FACTOR G, MITOCHONDRIAL	4	170	IPR045044	-
	Aip02g00024	188	PANTHER	ELONGATION FACTOR G, MITOCHONDRIAL	4	170	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip02g00024	Aip-Chr2	638812	642986	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip02g00024	51	183	Eukaryotic Initiation Factors Gene Family	AT3G22980	35.862	1.67e-18	80.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip02g00024	K02355		-	gmx:100796646	285.034