Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03407 ATGATGAATGGTGGAAGCAGCAGGAGCAGCAGGTTCCCATTCACACCATCACAGTGGCAAGAGCTTGAACACCAAGCACTCATCTACAAATACATGGCTTCTGGCATCTCCATCCCCCCTGATCTCCTCTTCTCCATCAAAAGAGGCTACCACCTTGACCACTCTAGGCTCTTCCCTCACCACCACCCTCCACAACACCTTGGATGGAACTATCTGCAGATGGGTCTGGGAAGAAAGATAGACCCTGAACCAGGAAGATGCAGAAGAACCGATGGAAAAAAATGGAGATGCTCAAAGGAAGCATATCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGCAAGAACCGTTCAAGAAAGCCTGTGGAACAACAACAACCTTTGAAACAATCACCAGCAGCAGCACCAACCAACACGGATGATGCTGCTGCTTCTTCTCATCATGCTCCATCTTCTTCAACCACAACAACAATCTTATCAATCACCAACAACAACAATAACTCTCTCTCTCCTCTCTCATCTGCATCACTGTCCTCTCATCATGACCTTTATCATCAACACCAACACCAACACTCCTTCCTCTACCACCACCAACCCTCTTCAAGGTCCTCCAACTCCATTGGCTTCTCTTTTCAGGACAACAACAACGCTGCTCCTTTGTTTCTTGACACCCAGACCAACACCGACTGCAGAGAGAGGTATATTTATGGGCTGAAAGAGGAGGTGGATGAGCATGCTTTCTTCACTGAACCTTCGGGAACAATGAGAAGCTTCTCTGCTTCGTCCATGGATGATTCATGGCAGCTGACACCACTCACCATAAGCTCCTCAACTTCTTCGAAGCAGAGGAGCTGCTCTGGCTTGTCCAATGAAAACAACAACGAGTACTCTTACTTGCAGCTTCACCACCATAACAACAACAACAACTCAAAGCAAAGAGAAGCAGAACAAGATCATGGTTGCTACATGGCTCTTGGGAAAGAAGAAGAGCCACATCATCAGAAGACCACCGTTCATCGTTTCTTCGATGAATGGCCTCACAAGAGTAGAGGAGGCTCATCCTGGCTTGATTTGGATGATAAATCTTCCACTACTCAGCTTTCCATTTCCATCCCCACATCCTCTCATGACTTCACAACCTTCACTTCAAGGAACACTAGAGATGGTTAA 1173 0.4689 MMNGGSSRSSRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFSIKRGYHLDHSRLFPHHHPPQHLGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEQQQPLKQSPAAAPTNTDDAAASSHHAPSSSTTTTILSITNNNNNSLSPLSSASLSSHHDLYHQHQHQHSFLYHHQPSSRSSNSIGFSFQDNNNAAPLFLDTQTNTDCRERYIYGLKEEVDEHAFFTEPSGTMRSFSASSMDDSWQLTPLTISSSTSSKQRSCSGLSNENNNEYSYLQLHHHNNNNNSKQREAEQDHGCYMALGKEEEPHHQKTTVHRFFDEWPHKSRGGSSWLDLDDKSSTTQLSISIPTSSHDFTTFTSRNTRDG 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03407 390 Pfam WRC 82 124 IPR014977 -
Aip01g03407 390 Pfam QLQ 13 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Aip01g03407 390 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Aip01g03407 390 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Aip01g03407 390 ProSiteProfiles WRC domain profile. 81 125 IPR014977 -
Aip01g03407 390 PANTHER GROWTH-REGULATING FACTOR 5 3 366 - -
Aip01g03407 390 MobiDBLite consensus disorder prediction 122 163 - -
Aip01g03407 390 MobiDBLite consensus disorder prediction 108 163 - -
Aip01g03407 390 MobiDBLite consensus disorder prediction 184 211 - -
Aip01g03407 390 MobiDBLite consensus disorder prediction 194 211 - -
Aip01g03407 390 PANTHER - 3 366 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03407 Aip-Chr1 137035561 137037779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03407 2 127 GRF Transcription Factor Family AT3G13960 66.923 4.56e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Aip01g03407 WRC 8.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03407 - - ahf:112758812 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03407 01 137035561 137037779 Aip01g03407 01 137035561 137037779 ECH
Aip01g03407 01 137035561 137037779 Aip03g02604 03 47810719 47813122 PCT