Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03405 ATGGGGAGAAGCCCTTGTTGCTCAAAAGATGAGGACTTGAAAAGAGGTGCTTGGACTGCTGAAGAAGACAAAATCCTCATAGACTACATTAGGGTCCATGGCCATGGAAGATGGAGAAACCTCCCCCAAAAAGCAGGTTTAAAAAGATGTGGCAAAAGTTGTAGACTGCGATGGTTGAACTATCTAGGACCAGACATCAAAAGAGGCAATATATCCTCTGATGAAGAAGAACTCATCATCAGACTTCACAACCTCCTGGGAAATAGGTGGTCTCTAATAGCTGGGAGGCTTCCGGGGAGAACAGACAATGAGATCAAGAACTATTGGAACACCAACTTGAGTAAGAGGATGAAAGATAACAAGGATCACAACAAAGAAACAACCACCTCTTCTTCGAATCCAAAACACCCTCAAACAGAACCAACCCCTTTTAAGATTGACTTACCTGTAATCCGAACAAAGGCTACAAAGTGCTCAAAGCCATTACTTATAAATAACAATGCACAACAATCAACACCAATACCTTTGCTTCTGGATGCTTCTGCTGCTGCTGCTGGTTCTGAAGCCAACAACAATAAGAATATCGTTTCATCAATAGCAAGTAACCACAAAGAACTACTCTCAAAGAACTACAATAGTAATGATGAGTTTTTGCCCTTCTTCAGTGAAGATGATGACAAAGAAATACTCTCAATGACAGATTTGCTAATAGACGATTATTGTAATCTTACCGATGCTGATGGCGGCTTAAATGATCTTCTCATCAACTCTGATGTCTCTGATCTCTGTTATGAGGTATTATTATCGCCTTATTCGGACCAACCCACCACCATCTTCTCCGATGACATCCTCAATCAATGGACACATAGCTATTTCGATGATGCTGATGATCACATTAATCATGATGATGACTCAATCGTCGACCGTCATTGTCACCAGTCAAATGACAAGGAGATAGAATAA 963 0.4081 MGRSPCCSKDEDLKRGAWTAEEDKILIDYIRVHGHGRWRNLPQKAGLKRCGKSCRLRWLNYLGPDIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNLSKRMKDNKDHNKETTTSSSNPKHPQTEPTPFKIDLPVIRTKATKCSKPLLINNNAQQSTPIPLLLDASAAAAGSEANNNKNIVSSIASNHKELLSKNYNSNDEFLPFFSEDDDKEILSMTDLLIDDYCNLTDADGGLNDLLINSDVSDLCYEVLLSPYSDQPTTIFSDDILNQWTHSYFDDADDHINHDDDSIVDRHCHQSNDKEIE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03405 320 Gene3D - 72 142 - -
Aip01g03405 320 Gene3D - 12 68 - -
Aip01g03405 320 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 241 - -
Aip01g03405 320 CDD SANT 72 113 IPR001005 -
Aip01g03405 320 PANTHER TRANSCRIPTION FACTOR TT2 1 241 - -
Aip01g03405 320 MobiDBLite consensus disorder prediction 115 129 - -
Aip01g03405 320 SMART sant 67 115 IPR001005 -
Aip01g03405 320 SMART sant 14 64 IPR001005 -
Aip01g03405 320 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Aip01g03405 320 MobiDBLite consensus disorder prediction 114 145 - -
Aip01g03405 320 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Aip01g03405 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Aip01g03405 320 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Aip01g03405 320 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Aip01g03405 320 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Aip01g03405 320 CDD SANT 17 62 IPR001005 -
Aip01g03405 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03405 Aip-Chr1 137011795 137013109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03405 1 117 MYB Transcription Factor Family AT4G05100 70.085 8.01e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip01g03405 Myb_DNA-binding 3.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03405 K09422 - gmx:100802704 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03405 01 137011795 137013109 Aip09g01124 09 16468283 16472848 ECH
Aip01g03405 01 137011795 137013109 Aip01g03405 01 137011795 137013109 ECH
Aip03g02598 03 47581916 47585090 Aip01g03405 01 137011795 137013109 PCT