Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03398 ATGGGTGACGTTCTAAGCCCCTACACACTTTCACCCCCACCATCTTCATCATCTTCTTCAACAAAGTCCAACATTATCATGCTATATTATGGCCTGGCAGTTGTTGGAACCGCCGCAATAGCGCTAGCACTTTACAACTACTGCGTCATCAGAAGATGCAGCCGGCAACAACAACCGCATCCCGAAACAACAAGTGGGTTGGTCGAGGTTGTCGTGTCAAGAAACATGAGCTTCGAGAATTCGCAAAGTAACTTGCTCTCAAGCTTCAAGTACAAGAAAGAAGAAGCAGAGAAAAAGGAGAAAGCCCAAAAAGAAGAAGAAGAAGAAGGTGATGATGATGGTTCTTATGATGAGTGCCCAGTTTGTTTATCGGTTTTCGAAGAAGGTGAAGAAGTGAGGAAGCTTCCGAGATGCAAGCACTCTTTTCATGCTCAGTGTATAGATATGTGGCTTCACTCTCATTTTGATTGCCCTGTTTGCCGTACACCGGTGGGGCCTTTCTTCCGCCGTTTTCCGCCGGAGACTAATAATAATTCCGTTGAGGAGTTGCCGGAATCCGGTGGTGTGTGA 570 0.4632 MGDVLSPYTLSPPPSSSSSSTKSNIIMLYYGLAVVGTAAIALALYNYCVIRRCSRQQQPHPETTSGLVEVVVSRNMSFENSQSNLLSSFKYKKEEAEKKEKAQKEEEEEGDDDGSYDECPVCLSVFEEGEEVRKLPRCKHSFHAQCIDMWLHSHFDCPVCRTPVGPFFRRFPPETNNNSVEELPESGGV 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03398 189 SMART ring_2 119 160 IPR001841 -
Aip01g03398 189 Pfam Ring finger domain 117 161 IPR001841 -
Aip01g03398 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 166 IPR013083 -
Aip01g03398 189 Coils Coil 86 112 - -
Aip01g03398 189 MobiDBLite consensus disorder prediction 1 21 - -
Aip01g03398 189 MobiDBLite consensus disorder prediction 96 115 - -
Aip01g03398 189 CDD RING-H2_EL5_like 118 161 - -
Aip01g03398 189 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Aip01g03398 189 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 11 171 - -
Aip01g03398 189 SUPERFAMILY RING/U-box 118 173 - -
Aip01g03398 189 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 171 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03398 Aip-Chr1 136988022 136988698 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03398 32 164 C3H Transcription Factor Family AT5G17600 35.556 1.35e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03398 - - aprc:113852327 189.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03398 01 136988022 136988698 Aip01g03398 01 136988022 136988698 ECH