Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03395 ATGCTTACATGCATAGCACGTCCCAAGAAATCAGGCACGGGCAGCAACAACGAGTCTCTGAATAAGACCGATGATTCCGATCCCAACAACAAAAACCAGTCCATGAAATCTCTCACTTCCCAGGTAACTCAAAAATTGAACAAGACTCTGTTTCAGTTCAGTGAGTGTGTAATTTGCATCGTCATGTTTGTTATTCAGATAAAGGACATGGCGCTGAAGGCGTCGGGGGCGTACAAGCATTGCGCGCCGTGCACGGCGGGGCCGGCGGGGAGACTGGTGAGGAGAAACGGGGAGTCGTCGCCGGAGACGGACTCGGAGAGGTTCAGGTGGTCGTACCGGAGGACAGGGAGCTCGACGAGAGGTTGGGGGAAGGAGATGGAGGCGAGGCTGAAGGGGATATCGTCGTCGAGTGGGGAAGGCACGCCGAACTCCGCCAGCGGACGGCGGTTGGAGCCGGTGGTTCTGTTCGTCGAAGAGAATGAACCAAAGGAGTGGGTGGCGAACGTGGAGCCCGGCGTTTTGATCACCTTCGTGTCGCTTCCACGTGGCGGCAACGATCTCAAGCGCATTCGTTTCAGTCGCGAGATGTTTAACAAATTGCAAGCTCAAAGATGGTGGGCGGAGAACTATGACAGGGTGATGGAACTTTACAATGTTCAAAGGCTTAACCGTCAAGCATTCCCTCTTCCAACGCCGCCAAGGTCCGAAGATGAGGTAATTTATTgggtaatgctagggagacaaaaaatacagccagaacttgccttatttaGTATGGGAGTGGGATACTCTTCCTCGGATTCCTTCGATCATCAATCGATGCAATCCCGGAAGCTGCATGAATTAAATGGTGTTAACTCAACTCCAAAAGTCTCAACCATTAGTGCTGCCAAGACTGAGATATCGTCAATGGATGCTTCAATCAGAAGTAGCTCATCCAGAGAGGCTGATCAATCCGGCGATCTATCAATCAGCAATGCAACCGATTTGGATACCGAATGGGTTGAGCAAGATGAACCTGGTGTTTATATTACCATCAGAGCATTGCCAGGTGGCAAAAAGGAGCTCAGACGAGTTAGGTTCAGCCGAGAAAAATTTGGGGAGATGCATGCTAGATTATGGTGGGAGGAGAATCGTGCTAGAATACATGAACAATACTTGTGA 1164 0.4863 MLTCIARPKKSGTGSNNESLNKTDDSDPNNKNQSMKSLTSQVTQKLNKTLFQFSECVICIVMFVIQIKDMALKASGAYKHCAPCTAGPAGRLVRRNGESSPETDSERFRWSYRRTGSSTRGWGKEMEARLKGISSSSGEGTPNSASGRRLEPVVLFVEENEPKEWVANVEPGVLITFVSLPRGGNDLKRIRFSREMFNKLQAQRWWAENYDRVMELYNVQRLNRQAFPLPTPPRSEDEVIYWVMLGRQKIQPELALFSMGVGYSSSDSFDHQSMQSRKLHELNGVNSTPKVSTISAAKTEISSMDASIRSSSSREADQSGDLSISNATDLDTEWVEQDEPGVYITIRALPGGKKELRRVRFSREKFGEMHARLWWEENRARIHEQYL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03395 387 ProSiteProfiles BRX domain profile. 163 218 IPR013591 -
Aip01g03395 387 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 59 IPR044532 -
Aip01g03395 387 MobiDBLite consensus disorder prediction 9 38 - -
Aip01g03395 387 ProSiteProfiles BRX domain profile. 332 387 IPR013591 -
Aip01g03395 387 PANTHER PROTEIN BREVIS RADIX-LIKE 4 64 387 - -
Aip01g03395 387 PANTHER PROTEIN BREVIS RADIX-LIKE 4 1 59 - -
Aip01g03395 387 PANTHER PROTEIN BREVIS RADIX-LIKE 1 64 387 IPR044532 -
Aip01g03395 387 Pfam Transcription factor BRX N-terminal domain 66 84 IPR027988 -
Aip01g03395 387 MobiDBLite consensus disorder prediction 305 324 - -
Aip01g03395 387 Pfam Transcription factor regulating root and shoot growth via Pin3 163 217 IPR013591 -
Aip01g03395 387 Pfam Transcription factor regulating root and shoot growth via Pin3 332 386 IPR013591 -
Aip01g03395 387 MobiDBLite consensus disorder prediction 1 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03395 Aip-Chr1 136964941 136968707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03395 59 387 Major Intrinsic Protein MIP AT1G31880 44.023 3.51e-78 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03395 - - aip:107620530 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03395 01 136964941 136968707 Aip01g03395 01 136964941 136968707 ECH
Aip01g03395 01 136964941 136968707 Aip03g02576 03 45839508 45846084 PCT