Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03393 ATGAAGCCATTCCTCTTACTGAATCATCCCGATCCTGTGTTCAATTTCGAACAAGTCAATAGTACTCACTCAATGGCACATGCTCCTTTTCCTTACAGCGAACCATTTTTCGGTGGTTCATTAGTTGCTTATGGACCGCAGGCTGTTGGTCAACCCCAGATGTTGCCCCAAGTGCTGGGATTAGGATCCCCCAGAATCGCACTACCACTTGATCTTGCTGAAGATGGCCCCATTTATGTCAATGCTAAACAATACCATGGTATACTGAGAAGGAGACAGTCACGAGCAAAGCTCGAGGCTCAGAACAAGCTCATAAAAAATCGTAAGCCCTATCTTCATGAGTCGCGACATCGCCATGCTTTGAAAAGGGTTAGGGGATCCGGGGGACGCTTTCTCAGCGCTAAACAGCTGCAACTGTCTAATTCAGAACTCATTAACAGTGCCCGTTCAGGCTTGAACCCTGTCAATGTATATCATAAGAAAGATGCATCAGAGGTGGAAAGTCATCTCTCTAGAACCGGAGAAAACGCATCTTCCATCACAACGTGTTCTGACCTAACAAGTTTCTCCAGCAATGACATCAATTTCAGGCATCCTGAGCACAATTTCTTGGGAAGTTCCCCAAACATGGGTGGAGCATCACAATGCAGTGGGGGACACACCTTTGGTTGTTGA 675 0.4637 MKPFLLLNHPDPVFNFEQVNSTHSMAHAPFPYSEPFFGGSLVAYGPQAVGQPQMLPQVLGLGSPRIALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKNRKPYLHESRHRHALKRVRGSGGRFLSAKQLQLSNSELINSARSGLNPVNVYHKKDASEVESHLSRTGENASSITTCSDLTSFSSNDINFRHPEHNFLGSSPNMGGASQCSGGHTFGC 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03393 224 ProSitePatterns NF-YA/HAP2 subunit signature. 79 99 IPR018362 GO:0003677|GO:0016602
Aip01g03393 224 PRINTS CCAAT-binding transcription factor subunit B signature 77 99 IPR001289 GO:0003700|GO:0006355
Aip01g03393 224 PRINTS CCAAT-binding transcription factor subunit B signature 108 131 IPR001289 GO:0003700|GO:0006355
Aip01g03393 224 ProSiteProfiles NF-YA/HAP2 family profile. 74 134 IPR001289 GO:0003700|GO:0006355
Aip01g03393 224 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 219 IPR001289 GO:0003700|GO:0006355
Aip01g03393 224 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 77 131 IPR001289 GO:0003700|GO:0006355
Aip01g03393 224 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 1 219 - -
Aip01g03393 224 Gene3D - 74 136 - -
Aip01g03393 224 SMART cbf3 73 134 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03393 Aip-Chr1 136937247 136940045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03393 19 200 CCAAT-HAP2 Transcription Factor Family AT1G17590 47.312 4.86e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Aip01g03393 CBFB_NFYA 3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03393 K08064 - gmx:100792905 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03393 01 136937247 136940045 Aip01g03393 01 136937247 136940045 ECH