Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03382 ATGAGGAAAGGACTTCTGGGCCCCAGTCTCAAGCTCTCTGTCCCTGCTTCATCTGATCAAGCTTCTTTTTCCAAGTTCCTGACTGAAAGTGGAACCTTTAAAGATGGGGATCTGCTTGTCAACAGGGATGGAGTTAGAATTGTTTCTCAGAGTGAAGTGGAGCCTCCACCTCCAAACCCGATCATGCCGATAGACAACCAGCTAAGTTTGGCAGATATAGACACAATCAAAGTGGTTGGAAAAGGAACTGGAGGGGTTGTGCAGTTGGTGCAACATAAATGGACTAATCAGTTTTTTGCATTAAAGGAAATTCAAATGAATATCGAGGAGTCTATGCGAAAGCAGATAGCACAAGAGCTGAAAATTAATCAATCAGCACAATGTCCTTATGTTGTTGTCTGCTACCAGTCATTCTATGCCAATGGTGTTATATCAATCATCTTAGAGTACATGGATGGAGGGTCCTTAGCGGATCTTCTGAAGAAAGTCAAAACAATTCCAGAAGCTAATCTTGCAGCCATCTGTAAACAGGTGCTAAAGGGATTAATGTATCTTCACCATGAAAAACATATCATCCACAGAGACTTGAAACCTTCTAATTTGTTGATAAATCATAGAGGTGAAGTAAAGATTACTGATTTTGGTGTGAGTGCAATTATGGAAAGTACATCCGGTCAAGCAAATACTTTCATCGGCACATTCAACTATATGTCTCCAGAGAGGATCAACGGTAGCCAGCGTGGCTATAACTACAAAAGTGATATATGGAGCTTGGGATTAATATTGCTCGAGTGTGCTATGGGGAGGTTTCCATACACACCACCAGATCAAAGTGAGACATGGGAGAGTATTTTCGAACTTATTGAAACCATTGTAGATAAACCTCCTCCTACTGCTCCATCAGAACACTTTTCTGCAGAATTTTGCTCATTTATATCAGCATGCTTACAGAAAGACCCGAAGGATAGACTAACAGCTCAGGAACTTATGGGACATCCTTTTGTCAGCATGTACGATGACTTGCATATAGATCTTGGAGCATACTTCTCCAACGCAGGATCTCCACTCGCAACCTTATAA 1080 0.4139 MRKGLLGPSLKLSVPASSDQASFSKFLTESGTFKDGDLLVNRDGVRIVSQSEVEPPPPNPIMPIDNQLSLADIDTIKVVGKGTGGVVQLVQHKWTNQFFALKEIQMNIEESMRKQIAQELKINQSAQCPYVVVCYQSFYANGVISIILEYMDGGSLADLLKKVKTIPEANLAAICKQVLKGLMYLHHEKHIIHRDLKPSNLLINHRGEVKITDFGVSAIMESTSGQANTFIGTFNYMSPERINGSQRGYNYKSDIWSLGLILLECAMGRFPYTPPDQSETWESIFELIETIVDKPPPTAPSEHFSAEFCSFISACLQKDPKDRLTAQELMGHPFVSMYDDLHIDLGAYFSNAGSPLATL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03382 359 CDD PKc_MAPKK_plant_like 88 339 - -
Aip01g03382 359 SUPERFAMILY Protein kinase-like (PK-like) 70 341 IPR011009 -
Aip01g03382 359 PANTHER MAP KINASE KINASE 1 359 - -
Aip01g03382 359 ProSiteProfiles Protein kinase domain profile. 73 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g03382 359 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Aip01g03382 359 SMART serkin_6 73 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g03382 359 Gene3D Transferase(Phosphotransferase) domain 1 153 354 - -
Aip01g03382 359 Gene3D Phosphorylase Kinase; domain 1 62 152 - -
Aip01g03382 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Aip01g03382 359 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 359 - -
Aip01g03382 359 Pfam Protein kinase domain 75 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03382 Aip-Chr1 136869798 136873710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03382 1 330 MAP Kinase Kinase Gene Family AT4G29810 66.667 5.06e-168 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Aip01g03382 Pkinase 8.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03382 K20603 - gmx:100789734 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03382 01 136869798 136873710 Aip01g03382 01 136869798 136873710 ECH
Aip01g03382 01 136869798 136873710 Aip03g02560 03 45135810 45139596 PCT