Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03377 ATGATGGGTGGTGTTTTGGAATTCCCAGCTGGAGAGTGTGTTCCGATTTCGGAAGCAGATTCGGATGTCTTAGCAGCTTATGTGCAGGATGTGAAGCAAAAATCTGAAGAAATCTTCGTTCCATTCAAAGAACTATGCAAATCAAGCAGGATGGAAACCTTGCTACTAGAAGATGACAATCCTGCAGATGCACTTCTAAGCTTTATCTCTGAATCTGGCATCCAGATACTAGTGATGGGTCCTGACTCCTCAAATTTTATTACAAGAAAATTGAAAGGACCAGGGATATCAGCGACCGTTCTAAGAAGTGCTCCTGACAGCTGTGATGTATATCTTGTAGCTAGAGATAAAATTATGTCGAAGTTAGCTGATTCTTCATCTTTTAATTCTCAAGAGAGTAGTTCAAGGTATTCAGTGAATTCTCAGGAAAATAAAGGGGAAAGTGGTGTAGGGATTTGCAGAGAAATGTCCGGAATTAATACTCCAATTCTAAAAAATTTTCGATTTTTATCGATATCAGACCGTAATTATATTGGTCTACAAACATCCAGTCGCAGGAGCTCATTAGATAATTCTAGCAGTGGTGATGATTTTGAAGCTATTAGCCTCCACTCATTTGACTATGTAACTTCTGCGCAACGTGAACATTTAGCAATGCAAGAAGAAGTGGATCGGCTACAGCTGGAGTTGCAGAATACTATTGCTATGTACAAACAAGTCTGTGAAGACCTAGCTCATGTTCGAAACAAGACCCTTCTACTTTCTTCTGAATCTCTTGAAGAAGCTAAGAGAGTACATGCTTCCCTTGAAAACGAGCAGTTTTTGAGAAAAGTTGCTGCTGAAGAGAAAGAGAAGTATTTAAAAGTTATGAAGGAACTCGAGGAGGTAAAAAACGTGCTTGCCAAAGAGTCGTATGAAAGACAGATTGCTGAACTTGATGTCCTTAAAGAATCCATAGAAAAAAAGAGAATAGTCGATACATTGATCTCACATGACAAGAGATACAGAATTTACACCATGGATGAAATCAAGGAAGCAACAAATTTCTTCTCCGAGGACTTGGTAATTGGTGAAGGAGGGTATGGGAAAGTTTACAAGTGCACTCTGGATCACACACCAGTAGCAGTAAAGGTTCTCCATCCAGATGCAATCAACAAGAAAGAGGAGTTTCTGAAAGAGGTTGAGATTCTTAGTCAACTACACCATCCAAACATGGTTTTGTTACTTGGAGCTTGTCCTGACACCGGTTGCCTTGTTTATGAATACATGGACAATGGAAGTCTAGAAGACTATATTTTCAAGAGAAATGGGAAACAGCCTCTTCCTTGGTTTACTCGATTCCATATTGTTTTTGAGATGGCCTGTGGGCTCTCATTCTTACACAACACAAAGCCAGAGCCTATTGTTCATCGAGATATCAAACCTGGCAATATCCTCTTAGACAGGAATTATGTGAGCAAAATTGCGGACGTAGGGCTGGCTAAACTCCTTTCAGATGTCGTGCCTGACAATGTCACAGAGTACAGAGAATCCATGCTTGCCGGTACTCTCCATTACATGGATCCAGAGTATCAGAGGACTGGCACAGTCCGAACAAAATCAGATGTATATGCTTTTGGACTTATAACTCTTCAGTTGATAACTTCTCGCCACGCGCGTGGACTCATTTTGGCTGCTGAAGATGCAGTTATGAAGGGCTCCCTTGGTGATATTTTAGATAAATCAGCTGGTGATTGGCCTCTCAATGAGACATTGGAATTGGCCCAAATTGCCCTTAAATGTGTTGCACTTAGATGCAGGGATAGACCAGATCTTGACACTGAAGTTCTTCCACAGCTTGAAAGACTTTCTGTTGTGGCAGATGCAGGTGCAAGGATAGGAAGAAGAAAGAGTATACACACACCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATAATGGATGATCCGCACGTGGCTGCGGATGGTTTCACTTATGAGTACAGAGCAATCAAAGCATGGCTTAGCAGACACAACGTTTCACCGGTGACAAAGCATAAACTCAGAAATTCTATCTTGATTCCAAACCATACTTTACGTTCTGCCATTCAAGAGTGGAAGTCAGGAGTGTCCTCATTTGATTAG 2124 0.411 MMGGVLEFPAGECVPISEADSDVLAAYVQDVKQKSEEIFVPFKELCKSSRMETLLLEDDNPADALLSFISESGIQILVMGPDSSNFITRKLKGPGISATVLRSAPDSCDVYLVARDKIMSKLADSSSFNSQESSSRYSVNSQENKGESGVGICREMSGINTPILKNFRFLSISDRNYIGLQTSSRRSSLDNSSSGDDFEAISLHSFDYVTSAQREHLAMQEEVDRLQLELQNTIAMYKQVCEDLAHVRNKTLLLSSESLEEAKRVHASLENEQFLRKVAAEEKEKYLKVMKELEEVKNVLAKESYERQIAELDVLKESIEKKRIVDTLISHDKRYRIYTMDEIKEATNFFSEDLVIGEGGYGKVYKCTLDHTPVAVKVLHPDAINKKEEFLKEVEILSQLHHPNMVLLLGACPDTGCLVYEYMDNGSLEDYIFKRNGKQPLPWFTRFHIVFEMACGLSFLHNTKPEPIVHRDIKPGNILLDRNYVSKIADVGLAKLLSDVVPDNVTEYRESMLAGTLHYMDPEYQRTGTVRTKSDVYAFGLITLQLITSRHARGLILAAEDAVMKGSLGDILDKSAGDWPLNETLELAQIALKCVALRCRDRPDLDTEVLPQLERLSVVADAGARIGRRKSIHTPSQYYCPILQEIMDDPHVAADGFTYEYRAIKAWLSRHNVSPVTKHKLRNSILIPNHTLRSAIQEWKSGVSSFD 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03377 707 Coils Coil 276 322 - -
Aip01g03377 707 MobiDBLite consensus disorder prediction 128 147 - -
Aip01g03377 707 SUPERFAMILY RING/U-box 633 700 - -
Aip01g03377 707 CDD RING-Ubox_WDSUB1_like 638 678 - -
Aip01g03377 707 Pfam U-box domain 635 700 IPR003613 GO:0004842|GO:0016567
Aip01g03377 707 SMART serkin_6 350 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g03377 707 ProSitePatterns Protein kinases ATP-binding region signature. 356 377 IPR017441 GO:0005524
Aip01g03377 707 ProSiteProfiles U-box domain profile. 633 706 IPR003613 GO:0004842|GO:0016567
Aip01g03377 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Aip01g03377 707 SMART Ubox_2 637 699 IPR003613 GO:0004842|GO:0016567
Aip01g03377 707 PANTHER OS02G0152300 PROTEIN 10 702 - -
Aip01g03377 707 MobiDBLite consensus disorder prediction 128 148 - -
Aip01g03377 707 Gene3D Transferase(Phosphotransferase) domain 1 423 625 - -
Aip01g03377 707 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 115 - -
Aip01g03377 707 Coils Coil 209 229 - -
Aip01g03377 707 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 10 702 - -
Aip01g03377 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 633 704 IPR013083 -
Aip01g03377 707 Pfam Protein tyrosine and serine/threonine kinase 355 606 IPR001245 GO:0004672|GO:0006468
Aip01g03377 707 Gene3D Phosphorylase Kinase; domain 1 328 422 - -
Aip01g03377 707 ProSiteProfiles Protein kinase domain profile. 350 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g03377 707 CDD STK_N 14 115 - -
Aip01g03377 707 SUPERFAMILY Protein kinase-like (PK-like) 332 605 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03377 Aip-Chr1 136835247 136839283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03377 9 701 Plant U-box Gene Family AT5G57035 52.461 0.0 754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Aip01g03377 PK_Tyr_Ser-Thr 3.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03377 - - gmx:100805896 1060.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03377 01 136835247 136839283 Aip01g03377 01 136835247 136839283 ECH