Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03374 ATGTGCGGCGACGCAACCAACTGGGACGAAAATGCGTACAGGGAACGCCTCCTCAAGGAGAGGGAGATCCAAACCCGAACCGTTTTCCGTACGGCTTGGGCTCCTAGTCCCCGAAACCCTAATCCTCACTCTCTCGTCGTTGCTTCCAGCGACGGTTCTATCGCCTCCTACTCCATCCCTTCCTGCATCTCCAACCTCAAAAGTAATACCGATGCCAATGCGGCTAGATTATTGGCTGAACCAGATTGCTTCTTTCAAGGGCATGATGGACCTGCATATGATGTCAAATTCTATGGTGATGGTGAAGATGTACTGTTGTTAAGTTGTGGAGATGATGGGTGGATTCGAGGATGGAGGTGGAAGGAACTTGCAAACTCAAATAGTGCTGTTTCTTCTCAAGGAAACAATATCAAACCCATACTTGACCTGGCAAATCCTCAACACAAAGGTCCTTGGGGTGCACTTTCACCTATCCCTGAGAATAATGCTATTGCTGTTAATTCTCAGGGAGGATCTGTTTTCTCTGCTTCTGGTGATTCTTGTGCATATTGTTGGGATGTGGAAACTGGTAAAGTGAAAATGGTATTTAAGGGGCACTTGGACTACTTGCACTGCATAGTTGCTCGCAACTCATCCAATCAGATCATAACTGGTTCAGAGGACAGGACTGCACGAATTTGGGATTGCAAAAGTGGAAAGTGTATCAAAGTGATTGATCCAGTAAAAGATTTGAACTTAAAAGGATCTGTTTCATGGGTTGGCTGTGTTGCATTAGATGCAAGTGAGAGCTGGTTGGCTTGCAGTAGTGGACGGAATATATCCCTTTGGAACCTTCCTGCTTCAGAGTGCTTATCAAGGATTTCAACTCGTGCTTCTGTACAGGACATGCTATTTGACAGCAACCAAATTTTGGCAGTTGGTGCAGATCCTCTACTCAATCGCTTTGACATGAATGGTGCAATCCTTTCGCAAATACAGTGTGCTCCTGCATCAGCTTTCTCTGTCTCCTTACATCCTGCAGGGGTTGTGGCAGTTGGAGGTTATGGATGCCTTGTAGATGTTATCTCACAATTTGGAGCTGTACCATTCTACGCGGACCAAAATGCCACAGATTTGTTGCTCGCCGCAGAAACATCTGAGATCCGAGGAGTTTGGGAAACCCTAACTCCGCTCGATCTTCTTCCACTGCAAACATCTTCGTCTTCTTCATCATCAACATCAACGTCAATATCAACATCATCATCCGCAGTCATGGCAGGAGCTGCACCTGAGGGAACACAGTTCGATGCTCGTCAATTTGATGCCAAAATGAATGATTTACTCACAGCTGATGGACAGGACTTCTTCACATCTTATGATGAGGTGTACGATAGCTTTGATGCTATGGGTTTGCAAGAGAATCTCCTCAGAGGCATTTATGCCTATGGTTTTGAAAAGCCATCGGCTATTCAGCAAAGGGGAATTGTCCCATTCTGCAAGGGACTTGATGTTATTCAACAGGCCCAATCTGGAACTGGAAAAACTGCAACTTTCTGCTCTGGGATCTTGCAGCAACTTGACTACAGCCTGACTGAATGTCAGGCCTTGGTTTTAGCACCAACCCGTGAGCTTGCTCAGCAAATTGAGAAGGTTATGCGAGCGCTTGGTGATTATCTAGGTGTGAAGGTTCATGCCTGTGTGGGAGGCACCAGTGTTCGTGAAGACCAACGTATTCTAGCCAGCGGTGTTCATGTTGTTGTTGGTACTCCTGGACGTGTCTTTGATATGCTGCGCAGACAGTCACTTCAGCCGGATCACATTAAAATGTTTGTGTTGGATGAGGCCGATGAAATGCTTTCAAGGGGTTTTAAAGACCAGATCTACGATATATTCCAGTTGCTGCCATCTAAGATTCAGGTAGGAGTTTTCTCTGCCACAATGCCACCTGAGGCCCTTGAAATTACTAGGAAGTTCATGAACAAACCTGTGAGGATCCTTGTGAAGCGTGACGAGCTCACTTTGGAGGGTATAAAGCAGTTTTATGTCAATTGTGAGAGAGAGGAATGGAAGCTCGACACACTTTGTGATCTGTACGAGACATTAGCCATTACCCAGAGTGTCATTTTTGTCAACACCAGAAGGAAGGTCGATTGGTTGACTGACAAGATGCGAAGCCGAGACCACACGGTGTCAGCCACCCACGGAGACATGGACCAGAATACGAGGGACATCATTATGCGGGAATTCCGATCTGGGTCTTCCCGTGTTCTTATAACAACCGATCTTCTGGCACGTGGTATTGATGTTCAGCAAGTGTCTCTTGTTATAAACTATGATCTCCCTACACAGCCTGAGAACTATCTCCACCGTATTGGTCGTAGTGGTCGGTTTGGTAGGAAGGGTGTTGCCATCAACTTTGTCACGAAGGATGATGAAAGAATGCTGTTTGACATCCAGAAGTTTTATAATGTGCAAATCGAGGAGCTGCCTGCAAATGTTGCTGAACTCCTCTGA 2493 0.4609 MCGDATNWDENAYRERLLKEREIQTRTVFRTAWAPSPRNPNPHSLVVASSDGSIASYSIPSCISNLKSNTDANAARLLAEPDCFFQGHDGPAYDVKFYGDGEDVLLLSCGDDGWIRGWRWKELANSNSAVSSQGNNIKPILDLANPQHKGPWGALSPIPENNAIAVNSQGGSVFSASGDSCAYCWDVETGKVKMVFKGHLDYLHCIVARNSSNQIITGSEDRTARIWDCKSGKCIKVIDPVKDLNLKGSVSWVGCVALDASESWLACSSGRNISLWNLPASECLSRISTRASVQDMLFDSNQILAVGADPLLNRFDMNGAILSQIQCAPASAFSVSLHPAGVVAVGGYGCLVDVISQFGAVPFYADQNATDLLLAAETSEIRGVWETLTPLDLLPLQTSSSSSSSTSTSISTSSSAVMAGAAPEGTQFDARQFDAKMNDLLTADGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDMLRRQSLQPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNCEREEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVQIEELPANVAELL 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03374 830 PANTHER RNA HELICASE 440 830 - -
Aip01g03374 830 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 488 658 IPR014001 -
Aip01g03374 830 Pfam WD domain, G-beta repeat 246 277 IPR001680 GO:0005515
Aip01g03374 830 Pfam WD domain, G-beta repeat 192 228 IPR001680 GO:0005515
Aip01g03374 830 SMART ultradead3 476 673 IPR014001 -
Aip01g03374 830 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 669 830 IPR001650 -
Aip01g03374 830 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 196 228 - -
Aip01g03374 830 SMART helicmild6 710 791 IPR001650 -
Aip01g03374 830 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 440 830 - -
Aip01g03374 830 CDD DEADc_EIF4A 461 659 - -
Aip01g03374 830 SMART WD40_4 14 58 IPR001680 GO:0005515
Aip01g03374 830 SMART WD40_4 78 119 IPR001680 GO:0005515
Aip01g03374 830 SMART WD40_4 318 356 IPR001680 GO:0005515
Aip01g03374 830 SMART WD40_4 136 186 IPR001680 GO:0005515
Aip01g03374 830 SMART WD40_4 280 316 IPR001680 GO:0005515
Aip01g03374 830 SMART WD40_4 231 277 IPR001680 GO:0005515
Aip01g03374 830 SMART WD40_4 189 228 IPR001680 GO:0005515
Aip01g03374 830 Gene3D - 447 665 IPR027417 -
Aip01g03374 830 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 604 612 IPR000629 -
Aip01g03374 830 SUPERFAMILY WD40 repeat-like 39 357 IPR036322 GO:0005515
Aip01g03374 830 Gene3D - 7 150 IPR015943 GO:0005515
Aip01g03374 830 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 457 485 IPR014014 GO:0003724
Aip01g03374 830 Pfam Helicase conserved C-terminal domain 683 791 IPR001650 -
Aip01g03374 830 Gene3D - 666 830 IPR027417 -
Aip01g03374 830 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 237 IPR001680 GO:0005515
Aip01g03374 830 CDD SF2_C_DEAD 670 800 - -
Aip01g03374 830 Pfam DEAD/DEAH box helicase 482 643 IPR011545 GO:0003676|GO:0005524
Aip01g03374 830 Gene3D - 151 437 IPR015943 GO:0005515
Aip01g03374 830 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 526 811 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03374 Aip-Chr1 136812682 136820936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03374 418 830 Eukaryotic Initiation Factors Gene Family AT1G72730 88.164 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03374 K03257 - qsu:112002178 1351.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03374 01 136812682 136820936 Aip01g03374 01 136812682 136820936 ECH