Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03370 ATGGTGGTGGTTGCTCACGGTGGAAGCGGTGGCGGCCAGGCTTGCTCACCGCCACAGTTCAACAAAGCTATTGCGGAAGAAAAACGAGTGGAAATGGTGAGAGTCAAATCAGAGCAAGTGACGTCTTCCTGCCACTTCTTGGAACAAAACGACGACGTTTCAAGCGACGAGTCTGATAAGAAGAGGAGCAACTCGGAAATGACGGAAGAAGAAGAGCCTCGCGTCAAAGAGGAGGCTGCTGATGACGGCGCCGTTAACTTGTCGTCATCTTCGTCGTCGGTGGAGTTGCCGAAACCGATGGAAGGGCTTAACGAGGCGGGTCCGCCACCGTTTCTAAGGAAGACGTATGAGATGGTGGAGGATCCGGAAACCGACCCGATTGTTTCGTGGAGCGAGAATCGCGATAGCTTCATCGTTTGGGAGTCTCACGAGTTCGCCAAAGTGCTTCTTCCAAAGTATTTCAAGCACAGCAACTTCTCCAGCTTCATTCGCCAGCTCAATACCTATGGCTTTAGGAAGGTTGATTCAGATCGTTGGGAGTTTGCAAACGAAGGATTCCAAGGAGGGAAGAAGCATTTGCTGAAGAACATAAGGAGGAGAAGCAAGTACAACAAACTGCATCAAGGAGCTTTCATCGACCCAGCTAAGCCTTGCCTTGAGGCTGAAGTTGAGAAGCTGAAGGAGGACCAAAACATACTCAAACTTGAAATTCTGAAGCTGAGACAACAGCAAGAAAGTTCCCACATTCATATCTCAAGCGTTCAGGACCGGATTCAGAACGTCCAGACGAAGCAGTATCAGATGATATATTTCCTCACCAGAATGGCCAGAAAGCCAACCTTTATGGAACAGCTCCTCCAAAAGATTAAGAGGAAGAGGGAGCTCGATGGCACCGACATGCTCAAGAGGCGCAGATTGCTGGAACCAACGCCTAGTGTTGATTATAGATGCCAACAAGGTCATCATCAATTGTCTACATTGCAATCTGAACTTAATGGAATATTGTCTGAAAATGTGATGAACACTAGCAATAAGATAGAGCAAACTGTTCCTTCTCCTCTGGAAGGTGAGTTATGCAACAAGGTACAAGGCTTGAGAAGCTATGGCTTTTCAAGGGGTGGTGATGTACCTTCTGCTTATCATGCCATGACAGAGAACCTATTGGGGGAAAATAATGGTGGTGCTGATGAAGAACTTGATGTGAATGACTCAAATATTTATCTTGAGTTGGAGGATTTGATTACTAAGCCAACAGATTGGGTTGGTTCTGCATCTGCTGGTGGCTTAGTGGGGACAAACTAG 1302 0.4716 MVVVAHGGSGGGQACSPPQFNKAIAEEKRVEMVRVKSEQVTSSCHFLEQNDDVSSDESDKKRSNSEMTEEEEPRVKEEAADDGAVNLSSSSSSVELPKPMEGLNEAGPPPFLRKTYEMVEDPETDPIVSWSENRDSFIVWESHEFAKVLLPKYFKHSNFSSFIRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKYNKLHQGAFIDPAKPCLEAEVEKLKEDQNILKLEILKLRQQQESSHIHISSVQDRIQNVQTKQYQMIYFLTRMARKPTFMEQLLQKIKRKRELDGTDMLKRRRLLEPTPSVDYRCQQGHHQLSTLQSELNGILSENVMNTSNKIEQTVPSPLEGELCNKVQGLRSYGFSRGGDVPSAYHAMTENLLGENNGGADEELDVNDSNIYLELEDLITKPTDWVGSASAGGLVGTN 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03370 433 MobiDBLite consensus disorder prediction 50 81 - -
Aip01g03370 433 SMART hsfneu3 107 200 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip01g03370 433 MobiDBLite consensus disorder prediction 34 109 - -
Aip01g03370 433 Pfam HSF-type DNA-binding 111 200 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip01g03370 433 ProSitePatterns HSF-type DNA-binding domain signature. 150 174 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip01g03370 433 SUPERFAMILY "Winged helix" DNA-binding domain 107 200 IPR036390 -
Aip01g03370 433 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 72 417 IPR027725 -
Aip01g03370 433 Gene3D - 104 201 IPR036388 -
Aip01g03370 433 PRINTS Heat shock factor (HSF) domain signature 111 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip01g03370 433 PRINTS Heat shock factor (HSF) domain signature 149 161 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip01g03370 433 PRINTS Heat shock factor (HSF) domain signature 162 174 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip01g03370 433 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-9 72 417 - -
Aip01g03370 433 Coils Coil 216 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03370 Aip-Chr1 136778107 136780601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03370 97 389 HSF AT2G26150 43.522 2.26e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Aip01g03370 HSF_DNA-bind 5.3e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03370 K09419 - gmx:100818430 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03370 01 136778107 136780601 Aip01g03370 01 136778107 136780601 ECH