Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03366 ATGGATGGCGTATTCAACCTCCCTGAAGCCACCAGGAGCGACTTTCTCCGCTCTCTCTTGCACACTTTTGGTTGCACATACATATGCCTCTGGCACTGCCACTCATCATCTAAGTGGGTTCCTGGTGCGGCTTTCAGGAGGCAAATGGCCTATTTAGAGCTTCAACAATTGGATCTTCTAAGACTTGCATCCGCAGTTATCCAAACACAATTCTATCTGGAAGCAAGGATTGAGAGAGCTATTTTCATGGGGTGCAGCAAAGGGGAAATTGAGCTTGGTTTCTCCACTATCCCTCAAATTGACATGAAAGCAGCAGTGAAGAGTTTATTCCCAGAAGATTTTTCAAGACAGCAGATTCATCATCCAGCTTCATCGTCTTCAAGCTCTTGCCCTAGCCATGAATTCTCATCCTTACGAGGAGTATTGTTACCCGCACCAGAGGGTGAGCAAGAAGCAATCATAAGAGCAATCCTTCATGTTATTTCTTCTTCTTCTTCACCCGCCACCGCTACTTCTCAACCACCACCATATAATAATAGTGCTTTCAGGGCATATTCTTCAACTGCTTACAATTTAGTAACAAGTAGCAGCAGCAGCAGGTTTAGTTTAATGAAGAGATCTATAGAATTCTCTAGAACCCTACATTTAATGAGAATTAGAGACCGCTTTCATTTCCAACATCAACACCAACTGCCTCATCATCCCCTCATCATTGATACCCAGAATGCTAATAATAATAAGCATCTTCGTCACATCATATTAGAGAGAAGAAGACGCGAGAACGAAAACAAGTGTTTCCGGGAACTTAGGGCATTACTTCCTCCAGGAACGAAGAAACACAAATCTTCGGTTCTTACAGCGGCAAAGGAGGCATTGAAGTCTTTAATTGCTGAAATTGAAAAGCTTAACATAAGAAACCAGCAGTTAAAAACACTACTTGGTTCATCATCATCAAGCTATGTTAATGTTCATAGCTCCTCATCATCATCATCATCAAATGAGAGATTGAACGTTGCGAACCTCAGCTTCGTTTCCATGGCCACAAACACTAGTACTAATACACAAGGCACAACCATCAACCAAATCATCTTCAGATTAAGGATTCTTCAGGGAAGTGAATGGGACGAGTCTGGCTTCGTGGAAGCAGTGAGAAGAATTGTGTCTAACTTAATACGTAATTGA 1182 0.4213 MDGVFNLPEATRSDFLRSLLHTFGCTYICLWHCHSSSKWVPGAAFRRQMAYLELQQLDLLRLASAVIQTQFYLEARIERAIFMGCSKGEIELGFSTIPQIDMKAAVKSLFPEDFSRQQIHHPASSSSSSCPSHEFSSLRGVLLPAPEGEQEAIIRAILHVISSSSSPATATSQPPPYNNSAFRAYSSTAYNLVTSSSSSRFSLMKRSIEFSRTLHLMRIRDRFHFQHQHQLPHHPLIIDTQNANNNKHLRHIILERRRRENENKCFRELRALLPPGTKKHKSSVLTAAKEALKSLIAEIEKLNIRNQQLKTLLGSSSSSYVNVHSSSSSSSSNERLNVANLSFVSMATNTSTNTQGTTINQIIFRLRILQGSEWDESGFVEAVRRIVSNLIRN 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03366 393 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 244 311 IPR036638 GO:0046983
Aip01g03366 393 Pfam Helix-loop-helix DNA-binding domain 249 295 IPR011598 GO:0046983
Aip01g03366 393 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 1 338 - -
Aip01g03366 393 SMART finulus 252 301 IPR011598 GO:0046983
Aip01g03366 393 Coils Coil 285 312 - -
Aip01g03366 393 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 338 IPR044658 -
Aip01g03366 393 Gene3D - 243 318 IPR036638 GO:0046983
Aip01g03366 393 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 246 295 IPR011598 GO:0046983
Aip01g03366 393 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 338 390 - -
Aip01g03366 393 CDD bHLH_AtbHLH_like 251 302 IPR045239 -
Aip01g03366 393 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 338 390 IPR044658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03366 Aip-Chr1 136756193 136759630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03366 1 390 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 29.167 2.40e-44 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip01g03366 HLH 7.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03366 - - ahf:112776694 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03366 01 136756193 136759630 Aip01g03366 01 136756193 136759630 ECH
Aip01g03366 01 136756193 136759630 Aip03g02459 03 41359546 41370782 PCT