Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03355 ATGCCTCCAAGAATCCTATTATGCGGCGACGTTTTTGGGCGGCTAAACCAGCTCTTCAAGCGCGTCTCATCGGTGAATAAATCGGCGGGTCCATTCGACGCGCTTTTCTGCGTGGGTCAGTTCTTCCCGGACTCGCCGGAGCAGCTCGACGAGTTCATGGCCTACGTCGAAGGCAGCTCCCAAATTCCGATTCCTACTTACTTCATCGGCGACTATGGCGTCGGTTCCGCCAAAGTATTGCTGGCGGCTTCCAAGGACTCCGCCAATCGTGGTTTCAAGATGGACGGTCTCAGAGTCCGCGAAAACTTGTTCTGGTTGAAAGGCAGTGGCAATTTCTCCCTCTTTGGTTTATCTGTGGCCTATTTATCCGGGAGAAAATCACCGGAAGGGCAACAGTTTGGAACCTACAGTCAGGATGATGTTGATGCTTTGCGAGCAATAGCGGAGGATCCCGGAATTGTGGACTTGTTAATCTTTATTGATCATCATTTTATTTATTATTATTTTGTTTGCAGCTACCATATTGCAGGCACTAAAGGTATATACTATACCCGTGAACCATATTCCAATGTTGATGCTGTGCATGTGACTCGTTTTATAGGGCTTGCTTCTGTTGGAAATAAAGATAAGCAGAAATTTATTCATGCACTTTCTCCCACTCCAGCATCTACCATGTCTTCCACTGAGATTGCCATGAAAACCACAAATAGCACCTTATCACCATACACACTCATGGAAAAAAGTACATCTCCGAAGGATGTCTCTAAGAGATCTGGTGATGTGATGTCTGATGATCAATATTGGAGATATGATGTTTCTCAAAAGCGTCGAAGACATGATGCTGGGGATGGGGAAAAAATATGTTTCAAATTTGTATCTTCTGGTTCTTGCCCACGTGGAGAGAAGTGCAATTTTCGACATGATGGGGATGCAAGGGAACGGTATAAGAGAGGGGTTTGCTTTGATTTTTTGAATAAAGGAAAATGTGAAAGGGGTCCAGATTGCAGCTTTAAGCACAGTTTGCAGAATGAAGGCGATATGCCTCCTTCTAGGCGGCCTGGATCTGAAAATACTAGATCAAAAGAATGTTGGTTTTGCTTGTCAAGCCCCAATGTGGAGTCTCACTTGATCATAAGCATTGGTGAAAATTACTACTTGGCACTGGCTAAAGGTCCACTTGTTGAAGACCATGTGCTGATAGTACCAGTTGAGCATATGCCAAGTACCTTGTCTCTGTCATCTGAATCTGAAGTTGAGCTCTGTCGGTTTCAGAACAGTCTTCAGAGGTATTGCAAGAGCCAGGGAAAGGAAGTCATCTTTTTTGAGTGGGTTTCCATACGCGGCACTCATGCAAATCTTCAGGCCATTCCTATTCCATCTTCCAAGGCAGTTATGGTTGAAAAGGCATTCAATTTAGCTGCACAAAAGATGGGATTTAAATTTGTGTCCAAGAATTTTGATAGCATTTCTGATGGAAGAAAATTTCTGAAGACACAAGCTGATGGGGAGTCAAGTTTGTTCTATGCCGAAATCCCAGGAGGCACAATTCTGCTGCACCGTGTTGAGGAGAAAGTGAGATTCCCTGCCCAATTTGGACGTGAGGTCCTGGCAGGGTTGCTCAATATGGCAGACAATGCAGACTGGAGGAATCGCAAACATAACAAAGAGGAAGAAATGAAAATCGTAGAAGATTTCAAGAGCCGATTTCAAGAATATGATCCAAACTGTTAA 1731 0.4425 MPPRILLCGDVFGRLNQLFKRVSSVNKSAGPFDALFCVGQFFPDSPEQLDEFMAYVEGSSQIPIPTYFIGDYGVGSAKVLLAASKDSANRGFKMDGLRVRENLFWLKGSGNFSLFGLSVAYLSGRKSPEGQQFGTYSQDDVDALRAIAEDPGIVDLLIFIDHHFIYYYFVCSYHIAGTKGIYYTREPYSNVDAVHVTRFIGLASVGNKDKQKFIHALSPTPASTMSSTEIAMKTTNSTLSPYTLMEKSTSPKDVSKRSGDVMSDDQYWRYDVSQKRRRHDAGDGEKICFKFVSSGSCPRGEKCNFRHDGDARERYKRGVCFDFLNKGKCERGPDCSFKHSLQNEGDMPPSRRPGSENTRSKECWFCLSSPNVESHLIISIGENYYLALAKGPLVEDHVLIVPVEHMPSTLSLSSESEVELCRFQNSLQRYCKSQGKEVIFFEWVSIRGTHANLQAIPIPSSKAVMVEKAFNLAAQKMGFKFVSKNFDSISDGRKFLKTQADGESSLFYAEIPGGTILLHRVEEKVRFPAQFGREVLAGLLNMADNADWRNRKHNKEEEMKIVEDFKSRFQEYDPNC 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03355 576 ProSiteProfiles Zinc finger C3H1-type profile. 282 310 IPR000571 GO:0046872
Aip01g03355 576 PANTHER CWF19-LIKE PROTEIN 1 173 575 - -
Aip01g03355 576 CDD MPP_CWF19_N 6 205 - -
Aip01g03355 576 SUPERFAMILY CCCH zinc finger 281 308 IPR036855 GO:0046872
Aip01g03355 576 PANTHER CWF19-LIKE PROTEIN 1 2 158 - -
Aip01g03355 576 SUPERFAMILY HIT-like 361 434 IPR036265 -
Aip01g03355 576 SMART c3hfinal6 314 341 IPR000571 GO:0046872
Aip01g03355 576 SMART c3hfinal6 282 309 IPR000571 GO:0046872
Aip01g03355 576 ProSiteProfiles Zinc finger C3H1-type profile. 314 342 IPR000571 GO:0046872
Aip01g03355 576 Gene3D - 271 341 - -
Aip01g03355 576 Pfam Protein similar to CwfJ C-terminus 2 502 573 IPR006767 -
Aip01g03355 576 SUPERFAMILY CCCH zinc finger 314 342 IPR036855 GO:0046872
Aip01g03355 576 Gene3D - 357 478 IPR036265 -
Aip01g03355 576 Pfam Protein similar to CwfJ C-terminus 1 357 470 IPR006768 -
Aip01g03355 576 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 173 575 IPR040194 -
Aip01g03355 576 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 2 158 IPR040194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03355 Aip-Chr1 136620426 136624532 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip01g03355 CwfJ_C_1 1e-37 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03355 K24939 - gmx:100782106 951.044
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03355 01 136620426 136624532 Aip01g03355 01 136620426 136624532 ECH