Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03349 ATGATACCTTCTTCTTCTTCTTCTATCATGATGCCTACTACTACCACTACTCTTCTTGATCTCAATCAAGATCTAACTCTAAGCCATGATGATGATGACCAAGAACACCAGCACCCCTTCGCTACTACTCACCATCAACAACAACAACAACAACAACAACCCTCTTCTCTTTCATTTCCAATCCTCCTCAACCCCCTACCTCATCAAAAGGTTGATGAGAAGATTGATGATGCTAATTGTAGTAGTGGATCACGGGATCATTCAGAAAAACCTAATCACGGCAGCGGAATCATCAAGCTGATTTGGAAGAATAAGAAACAAGAGGAAGCAGAAGAAGAAGAAGAAGAAGTGATCCCAAAGTGGATGCCTTCCAAGATGAGGATGATGCGGAAGATGATGATATCCGATCATCATCAACAACAACAACAGGAACAAGAGATTCCTATTATTGGAACTGACGATGACAACAACAACAGTACCACTGCTCCTACTGTTAGGGTTTGCTCTGATTGTCACACCACTAAGACTCCTCTCTGGAGAAGTGGACCAAGAGGCCCCAAGTCACTTTGCAATGCCTGCGGTATCCGACAAAGAAAGGCGAGGCGTGCCGCCATGGCTGCTGCGGCAGCAAATGGAACCACACTGGCGGCGGCTGAGGTAAACAAGTTTGGTAGAAGCAAAGAGAAGCAGCTCAAGTCCAAAACTTGCAGTAGTGAGTTGATGAAAAAGAAGCGCAATAAGCTTGCAGCTGCTGCGAGAGGGAAGCAATCTCATCATCATCATCATAATGATTATTGTTTCGAGGATTTGAGATTAAGATTATTAAGCAAGAATTTGGCTGTTCATCAAGTATTCCCTCAGGACGAGAAAGAAGCTGCGATCCTTCTCATGGCTTTATCCTATGGTCTTCTTCTTGGATGA 921 0.4397 MIPSSSSSIMMPTTTTTLLDLNQDLTLSHDDDDQEHQHPFATTHHQQQQQQQQPSSLSFPILLNPLPHQKVDEKIDDANCSSGSRDHSEKPNHGSGIIKLIWKNKKQEEAEEEEEEVIPKWMPSKMRMMRKMMISDHHQQQQQEQEIPIIGTDDDNNNSTTAPTVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAMAAAAANGTTLAAAEVNKFGRSKEKQLKSKTCSSELMKKKRNKLAAAARGKQSHHHHHNDYCFEDLRLRLLSKNLAVHQVFPQDEKEAAILLMALSYGLLLG 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03349 306 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 27 304 - -
Aip01g03349 306 MobiDBLite consensus disorder prediction 76 97 - -
Aip01g03349 306 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 27 304 - -
Aip01g03349 306 Pfam GATA zinc finger 168 201 IPR000679 GO:0006355|GO:0043565
Aip01g03349 306 Gene3D - 164 261 IPR013088 GO:0006355|GO:0008270
Aip01g03349 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 163 202 - -
Aip01g03349 306 MobiDBLite consensus disorder prediction 28 62 - -
Aip01g03349 306 ProSiteProfiles GATA-type zinc finger domain profile. 166 198 IPR000679 GO:0006355|GO:0043565
Aip01g03349 306 CDD ZnF_GATA 167 199 IPR000679 GO:0006355|GO:0043565
Aip01g03349 306 MobiDBLite consensus disorder prediction 76 93 - -
Aip01g03349 306 SMART GATA_3 162 214 IPR000679 GO:0006355|GO:0043565
Aip01g03349 306 MobiDBLite consensus disorder prediction 41 62 - -
Aip01g03349 306 ProSitePatterns GATA-type zinc finger domain. 168 193 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03349 Aip-Chr1 136569167 136570610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03349 155 302 C2C2-Gata Transcription Factor Family AT5G49300 34.459 2.25e-19 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aip01g03349 GATA 3.2e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03349 - - aip:107642994 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03349 01 136569167 136570610 Aip01g03349 01 136569167 136570610 ECH
Aip01g03349 01 136569167 136570610 Aip03g02442 03 39994596 39996789 PCT