Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03342 ATGGGAGCTCAGAACTCATCATTGTTTTTCTTCCTTGGAGGGATAATAGTGCTTATCATATTGCTCATTCTTCTCTTTGTCTATTGGATGATTATTAAACGGAGGTCACCACAAGAGGCAGAGGAGAAAATGGAAAAGGAACCTTCAATAATGAGTCAACACCAAGATGAGGTGGTGAAGGTAACATTTTCAAGCAAACAACAGCCAGGATCAATGGACTTCTTTAGTGGGAGCCTTGGGACAATTAGTCACTTCAACTTGAACACATTGAGAAGGGCAACAAGGAATTTTCATAGCAAAAATCTTCTTGGAAGTGGTGGTTTTGGCCCTGTTTATCAGGGAAAGTTGGCAGATGGAAGGCTAGTTGCTGTTAAGCAATTGTCTGCTGAGAAATCCCAACAAGGAGAAAAAGAGTTCTTGGCAGAGGTGAGATTAATCACAAGCATCCAACACAAGAATCTTGTTCGCCTTCTTGGTTGTTGCACTGATGGATCTCAAAGGATTCTTGTCTATGAATACATGAAGAACACAAGTTTGGACCGCATCCTATATGGAAAAAGTGACCAATTCCTGGATTGGAGCACTAGATTCCAAATTATTCTTGGAGTGGCAAGGGGATTGCAATATCTACATGAGGATTCGCATTTGAGAATTGTCCACAGAGATATCAAAGCAAGCAACATTCTTCTTGATGAAAAGTTTCAGCCAAAGATTGGAGACTTTGGGCTAGCAAGATTCTTTCCAGAAGATCAAGCTTACCTTAGCACTCAATTTGCTGGAACATTAGGATATACGGCTCCTGAATATGCTATTAGAGGAGAACTATCAGAAAAGGCTGATATCTACAGTTTTGGAGTTCTTGTACTTGAAATTATAAGTTGCAGAAAAAATACAGATCTTACTTTACCATCAGAAATGCAATACCTTCCTGAATATGCATGGAAGCTTTATGAGAAATCAATGGTGATGGGACTGGTGGATCCAAAGCTAAGGGAACATGGATTGGTGGAGAAGGATGTGATGAGAGCACTCCACGTGGCATTCTTGTGCCTACAGCCTCATGCAGGTCTGAGACCAGCCATGTCAGAGATCGTGGCACTGTTGACATTCAAAGTTGAAATGGTGTCAACACCAATGAGGCCATCTTTCTTTGATCGGAGACCCAAGAAGCACGATGAGGACATGCCCTCTTGGGAAGCCATATCAGACACTTTCTCTGTTCCAATCATAAGTGATTCTAATCCTCCAACATCTGAAGATCACTGA 1266 0.4147 MGAQNSSLFFFLGGIIVLIILLILLFVYWMIIKRRSPQEAEEKMEKEPSIMSQHQDEVVKVTFSSKQQPGSMDFFSGSLGTISHFNLNTLRRATRNFHSKNLLGSGGFGPVYQGKLADGRLVAVKQLSAEKSQQGEKEFLAEVRLITSIQHKNLVRLLGCCTDGSQRILVYEYMKNTSLDRILYGKSDQFLDWSTRFQIILGVARGLQYLHEDSHLRIVHRDIKASNILLDEKFQPKIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEIISCRKNTDLTLPSEMQYLPEYAWKLYEKSMVMGLVDPKLREHGLVEKDVMRALHVAFLCLQPHAGLRPAMSEIVALLTFKVEMVSTPMRPSFFDRRPKKHDEDMPSWEAISDTFSVPIISDSNPPTSEDH 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03342 421 Gene3D Transferase(Phosphotransferase) domain 1 174 377 - -
Aip01g03342 421 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 76 384 - -
Aip01g03342 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Aip01g03342 421 Pfam Protein tyrosine and serine/threonine kinase 99 309 IPR001245 GO:0004672|GO:0006468
Aip01g03342 421 CDD STKc_IRAK 103 369 - -
Aip01g03342 421 Gene3D Phosphorylase Kinase; domain 1 70 173 - -
Aip01g03342 421 ProSiteProfiles Protein kinase domain profile. 97 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g03342 421 SMART serkin_6 97 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g03342 421 SUPERFAMILY Protein kinase-like (PK-like) 76 371 IPR011009 -
Aip01g03342 421 PANTHER RECEPTOR-LIKE KINASE 76 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03342 Aip-Chr1 136525280 136527590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03342 85 384 Receptor kinase-like Gene Family AT1G56120 50.667 1.13e-101 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aip01g03342 PK_Tyr_Ser-Thr 6.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03342 - - ccaj:109792436 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03342 01 136525280 136527590 Aip03g02435 03 39793297 39795650 PCT