Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03340 ATGAAGATGGAAGATGAAGAAGAAGAAGGAGAAGAATGCATGACTGGGCTTTCTCTTGCTCTGGCGGGAACAGTAGTGCCAAACAATAAGAAGAACAAGCCTCTTATGGTTTCCCTTCATCAGAAAAAATTCTGTTCTACTCATCAGAGAATCGACGATGATGGAGGACACCACCACCACCATCACAACAACAAGAAACTCAGGCTTACAAAGGAGCAATCAACCATGCTTGAAAACAGCTTCAACCAGCATACCACTCTTAATTCAGCGCAGAAAAAATCACTTGCTGAAGAATTGAATCTAAAGACAAGACAAATTGAAGTTTGGTTTCAGAACAGAAGAGCTAGGACGAAGCTGAAACAGACGGAGGTGGATTGTGAGTTGTTGAAGAAACGGTGCCAAAGTCTAACAGATGAGAACCGAAGGTTGAAGAAGGAGTTGGAGGAAGTAACTGCTGCACTCAAAGCTACAACAACAACAACATCGCCACCATCATTATACATTCAACACTCCAAAGCTTCACCAGCTACCACTCTCACTATGTGTTCTTCATGCCACAAACTGCTCCTTCCAAATTCAAATTAA 585 0.4222 MKMEDEEEEGEECMTGLSLALAGTVVPNNKKNKPLMVSLHQKKFCSTHQRIDDDGGHHHHHHNNKKLRLTKEQSTMLENSFNQHTTLNSAQKKSLAEELNLKTRQIEVWFQNRRARTKLKQTEVDCELLKKRCQSLTDENRRLKKELEEVTAALKATTTTTSPPSLYIQHSKASPATTLTMCSSCHKLLLPNSN 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03340 194 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 42 187 - -
Aip01g03340 194 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Aip01g03340 194 PANTHER - 42 187 - -
Aip01g03340 194 SMART HOX_1 62 124 IPR001356 GO:0003677
Aip01g03340 194 Coils Coil 112 160 - -
Aip01g03340 194 CDD homeodomain 65 121 IPR001356 GO:0003677
Aip01g03340 194 Gene3D - 56 126 - -
Aip01g03340 194 SUPERFAMILY Homeodomain-like 48 121 IPR009057 -
Aip01g03340 194 Pfam Homeodomain 65 118 IPR001356 GO:0003677
Aip01g03340 194 Pfam Homeobox associated leucine zipper 120 154 IPR003106 GO:0006355|GO:0043565
Aip01g03340 194 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Aip01g03340 194 SMART halz 120 164 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03340 Aip-Chr1 136511020 136511917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03340 52 187 Homeobox Transcription Factor Family AT3G60390 58.824 6.26e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip01g03340 Homeodomain 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03340 K09338 - lang:109339930 158.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03340 01 136511020 136511917 Aip03g02431 03 39716506 39718308 PCT