Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03333 ATGAGTTATGGAAAGGACGACATAGAAGCTCCTCGGAGCTCCGGTGACATCGACGACGGAGGCTCCTCCTCCAGTCCCTTTGATATTGCCAGAACAAAAGATGCTTCCGTTCAACGACTCAAGCGTTGGAGGCAAGCAGCGCTTGTGCTTAACGCTTCTCGCCGATTTCGCTACACCTTGGACTTGAAGAAAGAAGAAGAAAAGGAGCAAGTGCTGAGAAAGATTAGAGGGCATGTTCAAGTCATCAGAGCAGCGTATCTTTTCAAGGAGTCTGCAAAAAAATTGAAAAGTGAATTAGGAATTGCCCCACATCCTACAAGCACCACTGGAGAATTTCAAATTGGGCTAGAGTTACTTTCTTCAATTGCAAGGGATCATAATACTGCTACTCTGCAAGAAAAAGGAGGGGTTGAAGGGATAGCAAGTTTGTTGGAGACCAATTTAGAAAAGGGGATTCAAGGTGATGACGCTGACTTGTCAAGACGGACAAAGGCTTTTGGCTCGAACAACTATCCTCGAAAGAAAGGAAGAAGTTTCTTGATGTTTGTTTGGGATGCTTGCAAGGATCTGACCTTGATTATTTTAATGGTAGCTGCTGCAGCTTCATTAGTACTGGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGTGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCGGGACCTAAATGAGGAGAAGAGAAACATTCGTTTGGAGGTAATTAGAGGAGGTAGAAGAGTTGAGATCTCAATCTATGACATTGTTGTTGGTGATGTCATACCCCTTAATATTGGTGACCAGGTCCCTGCTGATGGAATTTTGATCATCGGTCACTCTCTTGCAGTTGATGAATCTAGTATGACTGGGGAGAGCAATATTGTTGAAAAGAATTCTAAGAACCCTATTCTGATATCTGGTTGTAAAGTTGCAGATGGCAGTGGTGTTATGCTCGTAACGGCTGTTGGTATTAATACCGAATGGGGGCTTCTAATGGCTAACATTTCAGAAGACAATGGTGAAGAAACACCTTTGCAGGTACGCTTGAATGGTCTTGCCACCTTCATTGGTATAATTGGGCTCTCTGTGGCCGTCATCGTTCTGGTTGTGCTACTGGCCAGGTATTTCTCTGGGCATTCTAGAAACCCAGATGGAAGTGTTCAATTTACAGCTGGCAAGACTAAACTCAGTACTGCAATTGATGGAGCAATAAAGATAGTCACTGTTGCGGTCACTATTGTAGTGGTTGCAGTACCTGAAGGACTCCCTTTAGCAGTTACCTTAACACTTGCCTACTCTATGAGAAAAATGATGGCAGATAAAGCTTTGGTACGTAGGCTTTCTGCCTGTGAGACTATGGGCTCAGCCACAACTATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAGATGACTGTGGTTGAGGCTATCATTGGTGGGGAGAACATTGATCCTCCTCACGAGAAGTCAAAGCTCAAACCTATACTCTGCTCGTTGCTGATTGAAGGAGTTGCACAGAACACCAATGGCAGTGTTTTTGTACCTGAGGGTAGTAACAATGTTGAGGTTTCTGGATCACCAACGGAGAAGGCAATTTTACATTGGGCTGTTCAGCTTGGGATGAATTTTAAAGCCGCTAGAGCAGAATCATCAATTATTCATGTCTTCCCATTCAATTCAGATAAAAAACGAGGCGGGGTTGCAGTACAGACGACTGAATCTGAAATCCATATACATTGGAAAGGGGCTGCTGAGATAGTCCTAGGATGCTGTACACAGTATATGGATGTAAATGATCACTTAATAGAGATGGATGAAGGAAAGATGAACTATTTTAGAAGAGCTATTGAAGATATGGCTTCTCGTAGTCTACGGTGTGTTGCCATTGCATATAGATTATATGAAATGGAGAAAGTTCCAACTAGTGAAGACCTTGCTCACTGGTCATTACCTGAGGATAATCTCATCTTATTGGCTATTGTTGGTCTGAAGGATCCTTGTCGACCTGGTGTGAAAGATGCGGTGAAGCTTTGCCAGAAAGCTGGAGTTAAGGTAAAAATGGTCACCGGTGACAATGTCAAAACTGCAACAGCAATTGCCGTGGAATGTGGAATACTTAATTCATATTCCGAAGCTACAGAGCCATATGTCATCATTGAAGGAAAAGACTTCCGTGCGATGCAAGATGAAGAGAGATTAAAGATTGTTGAAAAGATATCAGTTATGGGACGATCGTCTCCGAATGACAAGCTTTTGCTCGTACAAGCACTGAGGAGGAAGGAGCATGTTGTTGCTGTAACTGGAGACGGAACTAATGATGCTCCTGCCTTACATGAGGCTGATATAGGTCTTGCAATGGGGATTCAAGGTACAGAAGTTGCGAAAGAGAGCTCTGATATCATTATATTGGATGACAATTTTGCTTCAGTTGTAAAGGTTGTCAGGTGGGGGAGGTCTGTGTATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTGAATATAGCAGCTCTTGTTATAAATGTTATTGCTGCATTTTCTTCCGGTGACGTACCACTAAATACAGTACAGCTTCTATGGGTAAATCTTATCATGGATACACTTGGAGCTCTAGCCTTGGCAACTGAACCACCAACTGATCATCTAATGGATCGTAATCCAATGAGTCGAAGAGAACCTCTTATATCAAATATTATGTGGAGGAATCTGCTGATACAGGCAATTTACCAAGTGTCTGTCCTACTTATACTCAATTTCCGAGGCATTTCCATACTGAATTTGGCACACAAGTCCAGTGACCACGCACTCAAAGTGAAGGACACTTTGATATTCAATGCCTTTGTTCTCTGTCAAGTTTTTAATGAATTTAATGCCCGCAAGCCGGATGAGTTCAATATATTCAAGGGAGTGACAAGAAATTACCTCTTTATGGGGATAGTGGCATTGACTGTAGTACTTCAGATTATCATCATTGAATTTCTAGAAAAGTTCGTTAAAACAGTCAAGCTAACTTGGCAACAGTGGCTCATTTGTGTCATCATTGGATTTATCAGCTGGCCTCTTGCTGTGGTTGGAAAACTGATACCAGTACCAGAAAAGCCAGAAAAGCAGCTCAGTAACTCTTTTAGGGAGTGTGCTGACCGTGTTCGAAGGTGTTTTTGTTGTGATGCTTCTGAAGAGAATCATGTATAG 3249 0.4207 MSYGKDDIEAPRSSGDIDDGGSSSSPFDIARTKDASVQRLKRWRQAALVLNASRRFRYTLDLKKEEEKEQVLRKIRGHVQVIRAAYLFKESAKKLKSELGIAPHPTSTTGEFQIGLELLSSIARDHNTATLQEKGGVEGIASLLETNLEKGIQGDDADLSRRTKAFGSNNYPRKKGRSFLMFVWDACKDLTLIILMVAAAASLVLGIKSEGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRDLNEEKRNIRLEVIRGGRRVEISIYDIVVGDVIPLNIGDQVPADGILIIGHSLAVDESSMTGESNIVEKNSKNPILISGCKVADGSGVMLVTAVGINTEWGLLMANISEDNGEETPLQVRLNGLATFIGIIGLSVAVIVLVVLLARYFSGHSRNPDGSVQFTAGKTKLSTAIDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEAIIGGENIDPPHEKSKLKPILCSLLIEGVAQNTNGSVFVPEGSNNVEVSGSPTEKAILHWAVQLGMNFKAARAESSIIHVFPFNSDKKRGGVAVQTTESEIHIHWKGAAEIVLGCCTQYMDVNDHLIEMDEGKMNYFRRAIEDMASRSLRCVAIAYRLYEMEKVPTSEDLAHWSLPEDNLILLAIVGLKDPCRPGVKDAVKLCQKAGVKVKMVTGDNVKTATAIAVECGILNSYSEATEPYVIIEGKDFRAMQDEERLKIVEKISVMGRSSPNDKLLLVQALRRKEHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNIAALVINVIAAFSSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMDRNPMSRREPLISNIMWRNLLIQAIYQVSVLLILNFRGISILNLAHKSSDHALKVKDTLIFNAFVLCQVFNEFNARKPDEFNIFKGVTRNYLFMGIVALTVVLQIIIIEFLEKFVKTVKLTWQQWLICVIIGFISWPLAVVGKLIPVPEKPEKQLSNSFRECADRVRRCFCCDASEENHV 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03333 1082 SUPERFAMILY Calcium ATPase, transduction domain A 255 349 IPR008250 -
Aip01g03333 1082 Gene3D - 157 353 - -
Aip01g03333 1082 Pfam Ca2+-ATPase N terminal autoinhibitory domain 25 67 IPR024750 GO:0005516
Aip01g03333 1082 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 126 1049 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Aip01g03333 1082 Gene3D - 474 830 IPR023214 -
Aip01g03333 1082 PANTHER CALCIUM-TRANSPORTING ATPASE 19 1062 - -
Aip01g03333 1082 CDD P-type_ATPase_Ca_PMCA-like 159 918 - -
Aip01g03333 1082 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 484 681 IPR023299 GO:0000166
Aip01g03333 1082 Gene3D - 487 684 IPR023299 GO:0000166
Aip01g03333 1082 PRINTS Sodium/potassium-transporting ATPase signature 220 240 - -
Aip01g03333 1082 PRINTS Sodium/potassium-transporting ATPase signature 470 491 - -
Aip01g03333 1082 PRINTS Sodium/potassium-transporting ATPase signature 596 614 - -
Aip01g03333 1082 PRINTS Sodium/potassium-transporting ATPase signature 857 878 - -
Aip01g03333 1082 PANTHER CATION TRANSPORTING ATPASE 19 1062 - -
Aip01g03333 1082 SFLD p-type atpase 459 837 IPR044492 -
Aip01g03333 1082 SUPERFAMILY HAD-like 475 890 IPR036412 -
Aip01g03333 1082 Pfam E1-E2 ATPase 255 455 - -
Aip01g03333 1082 Pfam Cation transporter/ATPase, N-terminus 134 202 IPR004014 -
Aip01g03333 1082 Pfam Cation transporting ATPase, C-terminus 870 1047 IPR006068 -
Aip01g03333 1082 SMART Cation_ATPase_N_a_2 131 207 IPR004014 -
Aip01g03333 1082 Gene3D - 185 1038 - -
Aip01g03333 1082 ProSitePatterns E1-E2 ATPases phosphorylation site. 479 485 IPR018303 -
Aip01g03333 1082 SUPERFAMILY Calcium ATPase, transmembrane domain M 134 1049 IPR023298 -
Aip01g03333 1082 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 417 509 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip01g03333 1082 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 752 865 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip01g03333 1082 SFLD Haloacid Dehalogenase 459 837 - -
Aip01g03333 1082 PRINTS P-type cation-transporting ATPase superfamily signature 301 315 - -
Aip01g03333 1082 PRINTS P-type cation-transporting ATPase superfamily signature 477 491 - -
Aip01g03333 1082 PRINTS P-type cation-transporting ATPase superfamily signature 677 688 - -
Aip01g03333 1082 PRINTS P-type cation-transporting ATPase superfamily signature 699 709 - -
Aip01g03333 1082 PRINTS P-type cation-transporting ATPase superfamily signature 785 804 - -
Aip01g03333 1082 PRINTS P-type cation-transporting ATPase superfamily signature 809 821 - -
Aip01g03333 1082 Gene3D - 35 90 - -
Aip01g03333 1082 Pfam haloacid dehalogenase-like hydrolase 474 799 - -
Aip01g03333 1082 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03333 Aip-Chr1 136448668 136460565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03333 10 1070 Primary Pumps ATPases AT4G29900 71.402 0.0 1533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03333 K01537 - gmx:100792945 1647.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03333 01 136448668 136460565 Aip03g02406 03 38819568 38833936 PCT