Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03326 ATGGAGGACTGTGAGGATTACAAGAATTACTGGGAGACCAACATGTTCCTCCAAACCCAAGAGTTGGACAGCTGGCAATTGGATGAGGCTTTCTCCGGCGGCTACTACGATTCTAGCTCTCCGGACGGCGGAGCTTCATCGGCGGCATCTAAGAACATTGTCTCCGAGAGAAATAGGAGGAAGAAGCTCAATGAAAGGCTCTTTGCACTTAGGGCAGTAGTTCCCAACATCACCAAGATGGATAAGGCATCAATCATAAAGGATGCAATTGATTACATAGAGCACTTGCATGAACAAGAGAGAAGGATTCAAGATGAGATAATGGAGCTTGAATCTGAGAAGCTCAAGAATCCAATTATAGCAGCAGCAGGAGACAATGATTTTGAACAGGATCTTCCCGTTCTTCTCAGATCTAAGAAGAAGAGACCCGATAATCTTCTCTTTGATACCTCAGCTTCTTCTTCCTCAAGAAATAACACCAACTATTTTCCCATTGAACTCATTGATCTGAGGGTAACATACAAGGGAGAGAAGATATTTGTGGTGAGCTTGACATGCAGCAAAAGAACAGATACAATGGTGAAACTGTGTGAGGTCTTTGAATCTTTAAAGCTCAAGATCATCACTGCTAATATTACTTCTTTCTCAGGCACACTCTCCGAGACACTCTTTGTTGAGGCAGATGAAGAAGAAAAAGATCATCTGCTGATAAGGATCCAAACAGCCATTGCAGCTCTTAATGATCCCCAAAGCCCAATGAGCATCTGA 768 0.431 MEDCEDYKNYWETNMFLQTQELDSWQLDEAFSGGYYDSSSPDGGASSAASKNIVSERNRRKKLNERLFALRAVVPNITKMDKASIIKDAIDYIEHLHEQERRIQDEIMELESEKLKNPIIAAAGDNDFEQDLPVLLRSKKKRPDNLLFDTSASSSSRNNTNYFPIELIDLRVTYKGEKIFVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGTLSETLFVEADEEEKDHLLIRIQTAIAALNDPQSPMSI 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03326 255 SMART finulus 53 102 IPR011598 GO:0046983
Aip01g03326 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 112 IPR036638 GO:0046983
Aip01g03326 255 Coils Coil 93 116 - -
Aip01g03326 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Aip01g03326 255 Gene3D - 45 114 IPR036638 GO:0046983
Aip01g03326 255 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 5 249 - -
Aip01g03326 255 PANTHER TRANSCRIPTION FACTOR BHLH35 5 249 - -
Aip01g03326 255 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03326 Aip-Chr1 136366111 136369533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03326 1 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 58.261 2.13e-81 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip01g03326 HLH 7.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03326 - - adu:107496381 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03326 01 136366111 136369533 Aip04g01436 04 28816232 28826423 PCT