Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03319 ATGAGGGATGGCAAGAAGTCAAATAATAGAGGGTTGCAAAAGTCCATTCATCCAAAGGCAAAAACTGAGTCAAAGCTAAATTCATCCTTGAGAGTCAAATCAAAAAGCACAAAGTGCCAAGGGAAGAAGCATAAGCTGAAACCAAAATCTCACATGCAAAGAAATGCATCTAACATGTCAAGGAAGAGAGCTACTGACCCTTCCATCAAAGGGCCTAACAAGGAGCCTTCAAAAAAGAAATTGATTATTAGGTTTAGTTTGCATGAAACTGATGATAAATCTTCAAAGAAGTTGTCCTCAAAGCTAAAGGGTGAAAAGGTTTCTTTTAGGTCTAAAGAAGAGGGTAAAGATGTTGATGGCAAGGTAAAGCTTCAAAACAGAAAGAGAAAGAGAAAAAAGAAAAGGCAGAGGAATAATGCAGATATCGATGATGCTTCTCGCCTCAAGAGGAGAACGAGATATCTATTAATCAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAGATTAGGCCAGAAAAGGAGCTACAAAGAGCGCGAAAGCAGATTTTAAAATGTAAACTTAGTATTCGTGATGCTATTCACCAGTTGGATTCTCTTAGTTCGTTGAATAACAGCGAAGATTCTGTCATTGTTCCAGATGGATCTAACTGCCATGAACATAAATACTGTCAGAAGTGCAACTTGCGAGAAGCTCTTCGAGATAAGGATATTATACGATGTGATGGTACATGCAATCGCACTTTTCACAAAAAATGTCTTGATCCTGCCTTAGACACTGAAAATATTCCTCCTGGAGAACATGGCTGGCTTTGCAAGTTTTGTGGATGTAAGATGGAAATACTGGGGGCAATGAATGCTCATCTTGGAACTCACTTCTCCTTACACAGTACTTGGCAGGATGTATTCAAAGAAGAGGCTGCTAAACCTGATGGTGATACTGCATTACTGAACCCTGAGGAAGAATGGCCGTCAGATGATTCTGAAGACGATGATTATGATCCGGAGAGGAGAGAGGACTGCCATAACATCAACACAGAAGGAAGCAATGATGATGCATCTAATAATTTAAGCAGTTCTACCAGTTTATGTTCTTCGGATGGTGAATGTTCTCTAGTAGATGAAGGTTTCAACCATGAATATTCATCTCTTGATGGATGCATAGATTCTAATGAATCTGAGGACAATGTCTGTGGCCCCAGGCAGCGAAAAACAGTTGACTACAAGCAACTTTATGATGAAATGTTTGGGAAGGATGCTGCTGCATGTGAACAAGTGAGTGAAGATGAAGACTGGGGTCCTACTAAAAGAAAGCGACGAGACAAGGAGTCTGATGCTGTTGATACTCTTATGACTTTGCATGAATGCCAGAATAGAATTCACAATAGTGAGAACATCAACATGGAACGAGAAGGTTCTCCGAGCAAACAAATCAAGAGGTCTTGTTTTCGGATTCCTCGTGAAGCAGTTGAGAAGCTTCGCCAAGTCTTTGCAGAGAATGAACTTCCTCCAAGATCCACGAAGTTGGCTCTCTCGAAAGAGTTGGGACTTGATATTGAGAAGGTTAACAAATGGTTCAAAAATGCACGTTACTCGGCACTCAAAAGCAGAAAGCAACACACAGAGGGAGCTGATCCGCCTCAGACTTCTGGTTCAAAGGATAACAGGTTACAAGACCCGGAGAGAGCTGAGGTTTCGAAACCAAAGGCATCAAAAAATATTATTAATCATTCTCTGAAGAATGGTAAGGCTGTTAATGGTAGAAAGAAAAGACGATCAGAAGTATCTCCAACCCAGCGAGAAAAGGGCGATAAGGAGTTGGAGGAGCTCAGTGATGATGTATGCTTGATGAAACTGTTGAAAAATAAAAAGAAGAGGTTGAACTCTGCATTTGAAGGGCACTCACATACAGCAGAGTTGGAGTTTGAAAAACTGAGCAAAGTGAAGGCTAAATTGGATAATTTGAGGCAAAAATTAACTGCAATTCTAAATTACAGGGCAAATGCTTCTAATGCATCCCATTCTAATGAACCATCAATTATGTATGTGCCCACTGCTGTGTTAAGGGAAAAGGTTGCATAG 2118 0.4051 MRDGKKSNNRGLQKSIHPKAKTESKLNSSLRVKSKSTKCQGKKHKLKPKSHMQRNASNMSRKRATDPSIKGPNKEPSKKKLIIRFSLHETDDKSSKKLSSKLKGEKVSFRSKEEGKDVDGKVKLQNRKRKRKKKRQRNNADIDDASRLKRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCKLSIRDAIHQLDSLSSLNNSEDSVIVPDGSNCHEHKYCQKCNLREALRDKDIIRCDGTCNRTFHKKCLDPALDTENIPPGEHGWLCKFCGCKMEILGAMNAHLGTHFSLHSTWQDVFKEEAAKPDGDTALLNPEEEWPSDDSEDDDYDPERREDCHNINTEGSNDDASNNLSSSTSLCSSDGECSLVDEGFNHEYSSLDGCIDSNESEDNVCGPRQRKTVDYKQLYDEMFGKDAAACEQVSEDEDWGPTKRKRRDKESDAVDTLMTLHECQNRIHNSENINMEREGSPSKQIKRSCFRIPREAVEKLRQVFAENELPPRSTKLALSKELGLDIEKVNKWFKNARYSALKSRKQHTEGADPPQTSGSKDNRLQDPERAEVSKPKASKNIINHSLKNGKAVNGRKKRRSEVSPTQREKGDKELEELSDDVCLMKLLKNKKKRLNSAFEGHSHTAELEFEKLSKVKAKLDNLRQKLTAILNYRANASNASHSNEPSIMYVPTAVLREKVA 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03319 705 MobiDBLite consensus disorder prediction 67 124 - -
Aip01g03319 705 ProSiteProfiles Zinc finger PHD-type profile. 233 290 IPR019787 -
Aip01g03319 705 MobiDBLite consensus disorder prediction 1 28 - -
Aip01g03319 705 MobiDBLite consensus disorder prediction 322 370 - -
Aip01g03319 705 MobiDBLite consensus disorder prediction 36 51 - -
Aip01g03319 705 SUPERFAMILY Homeodomain-like 491 555 IPR009057 -
Aip01g03319 705 CDD PHD_PRHA_like 235 287 IPR045876 -
Aip01g03319 705 ProSitePatterns Zinc finger PHD-type signature. 236 287 IPR019786 -
Aip01g03319 705 SUPERFAMILY FYVE/PHD zinc finger 227 292 IPR011011 -
Aip01g03319 705 Coils Coil 650 670 - -
Aip01g03319 705 SMART HOX_1 488 552 IPR001356 GO:0003677
Aip01g03319 705 MobiDBLite consensus disorder prediction 437 457 - -
Aip01g03319 705 MobiDBLite consensus disorder prediction 600 619 - -
Aip01g03319 705 MobiDBLite consensus disorder prediction 1 144 - -
Aip01g03319 705 MobiDBLite consensus disorder prediction 547 619 - -
Aip01g03319 705 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 90 569 - -
Aip01g03319 705 Pfam Homeodomain 498 543 IPR001356 GO:0003677
Aip01g03319 705 PANTHER BNAA01G07010D PROTEIN 90 569 - -
Aip01g03319 705 Gene3D - 490 556 - -
Aip01g03319 705 MobiDBLite consensus disorder prediction 332 346 - -
Aip01g03319 705 ProSiteProfiles 'Homeobox' domain profile. 488 548 IPR001356 GO:0003677
Aip01g03319 705 SMART PHD_3 235 288 IPR001965 -
Aip01g03319 705 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 296 IPR013083 -
Aip01g03319 705 CDD homeodomain 491 552 IPR001356 GO:0003677
Aip01g03319 705 Pfam PHD-finger 235 289 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03319 Aip-Chr1 136313198 136318048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03319 138 559 Homeobox Transcription Factor Family AT4G29940 56.512 6.24e-147 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Aip01g03319 Homeodomain 2.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03319 - - gmx:100817639 811.601