Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03298 ATGGTGAAAGCAAGCCTCCGGATTGGCAAGATTTCGTTGGTATCATTTGCTTGTTGTTTATTAACTCCACCATCAGTTTCATTGAAGAAAACAATGCTGGAAATGCTGCTGCTGCTCTTATGGCTGGACTTGCTCCCAAGACTAAGGTCCTTAGAGATGGAAAATGGTGTGAGGAAGAAGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATCCTTTAAAGATCGATCAATCCGCTCTTACCGGAGAGTCCCTTCCGGTCACCAAGAATCCAGGGGATGAGGTTTTCTCTGGCTCAACTTGTAAACAAGGTGAAATTGAAGCCGTCGTCATTGCAACTGGTGTCCACACATTCTTTGGCAAGGCGGCACACCTCGTGGATAGCACCAACCAAGTTGGACACTTCCAGAAGGTTCTCACAGCAATTGGAAACTTCTGCATATGTTCCATTGCTGTTGGTATGTTGGCTGAGATCATAGTCATGTACCCTATTCAGCATCGCAAATATAGAGATGGAATTGACAACCTGTTGGTCCTCTTGATTGGTGGAATCCCCATTGCTATGCCAACTGTGTTGTCTGTCACAATGGCCATTGGCTCTCACAGGCTCTCTCAGCAGGGTGCTATCACCAAGCGTATGACTGCCATTGAAGAAATGGCCGGCATGGATGTCCTCTGCAGTGACAAGACTGGGACACTCACCCTGAACAAGCTGAGCGTTGACAGGAACTTGATTGAGGTTTTTGCAAAGGGTGTGGACAAGGAACATGTTATCCTTCTTGCTGCAAGGGCTTCCAGGACTGAAAATCAGGATGCAATAGATGCTGCCATTGTTGGAATGCTTGCTGACCCAAAAGAGGCAAGGGCTGGGATAAGAGAGGTGCATTTCTTGCCATTCAATCCAGTTGACAAGAGAACAGCTTTGACTTACATCGATTCTGATGGAAATTGGCACAGGGCGAGCAAAGGTGCTCCTGAGCAGATCATTGCCTTGTGTAACCTTAGGGAAGATGCTAAGAAAAGGTGCCATGCTATTATTGACAAGTTTGCAGACAGAGGGCTTCGTTCGCTCGCTGTTGCTAGACAGGAAGTCCCAGAGAGAACAAAGGAAAGTGCCGGTGGTCCATGGCAGTTTGTTGGTTTGTTGCCATTGTTTGATCCCCCAAGACATGATAGTGCTGAGACTATCCGACAAGCTCTTAACCTCGGGGTAAATGTCAAGATGATTACTGGTGATCAACTTGCCATTGCTAAGGAGACCGGCCGGAGGCTTGGGATGGGAACAAATATGTATCCGTCTGCTTCCTTACTTGGTCAAGACAAGGATGCAAGTATTGCTGCACTTCCAGTGGAAGAGCTGATTGAGAAGGCTGATGGATTTGCTGGAGTATTTCCAGAGCACAAATATGAAATTGTCAAGAAGTTACAAGAGAGGAAACACATTTGTGGAATGACCGGAGATGGTGTCAATGATGCTCCTGCTTTGAAGAAGGCTGATATTGGAATTGCTGTTGCTGATGCCACTGATGCTGCAAGAAGTGCTTCTGATATTGTCTTGACTGAACCAGGATTGAGTGTTATTGTTAGTGCAGTCTTAACCAGCAGAGCTATTTTCCAAAGAATGAAGAACTATACGATCTATGCAGTATCTATCACCATCCGTATAGTGTTTGGCTTCATGCTCATTGCACTTATCTGGAAGTTTGACTTCTCGCCTTTCATGGTTTTGATCATTGCCATTCTAAATGATGGAACAATAATGACAATTTCGAAGGATCGTGTGAAACCATCTCCCTTGCCTGACAGCTGGAAACTGCAAGAAATATTCGCCACTGGGACTGTTCTTGGAAGTTACTTGGCATTGATGACTGTCATATTCTTCTGGGCAATGAAAGAAACTAGCTTCTTCCCTGACAAATTTGGAGTTAGACACCTTAGTCATGATGAAATTATGTCTGCTCTGTATCTACAAGTCAGTATTGTTAGCCAGGCTTTGATCTTTGTAACTCGTTCGCGCAGCTGGTCTTTCGTTGAACGCCCCGGATTGTTATTGGTCTCTGCTTTTATTATTGCTCAGCTGATTGCTACAATCATAGCAGTATATGCGGATTGGGGATTTGCAAAGGTGAAAGGAATTGGTTGGGGTTGGGCTGGAGTCATCTGGCTCTACAGTGTTGTCTTCTATATTCCTCTGGACTTCATGAAGTTCGCCATCCGCTACATCTTGAGCGGCAAGGCTTGGGTAAATCTGCTAGAAAACAAGACTGCCTTCACCACCAAGAAAGACTACGGTAAGGAAGAGAGGGAAGCTCAGTGGGCTCTTGCTCAGAGGACTCTGCATGGTCTTCAACCACCGGATACTTCCGGCATCTTCAATGAGAAGAATAGTTATAGGGAACTCTCCGAGATTGCCGAGCAAGCCAAGAGAAGAGCCGAAGTTGCAAGGCTTCGTGAGCTTCACACACTAAAGGGACATGTTGAGTCAGTGGTGAAGCTAAAAGGTTTGGACATTGATACAATCCAACAGCACTACACTGTCTGA 2628 0.4372 MVKASLRIGKISLVSFACCLLTPPSVSLKKTMLEMLLLLLWLDLLPRLRSLEMENGVRKKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPLKIDQSALTGESLPVTKNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDRNLIEVFAKGVDKEHVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSDGNWHRASKGAPEQIIALCNLREDAKKRCHAIIDKFADRGLRSLAVARQEVPERTKESAGGPWQFVGLLPLFDPPRHDSAETIRQALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDKDASIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLQEIFATGTVLGSYLALMTVIFFWAMKETSFFPDKFGVRHLSHDEIMSALYLQVSIVSQALIFVTRSRSWSFVERPGLLLVSAFIIAQLIATIIAVYADWGFAKVKGIGWGWAGVIWLYSVVFYIPLDFMKFAIRYILSGKAWVNLLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPDTSGIFNEKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03298 875 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 489 602 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip01g03298 875 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 102 274 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip01g03298 875 SUPERFAMILY Calcium ATPase, transmembrane domain M 155 771 IPR023298 -
Aip01g03298 875 PRINTS P-type cation-transporting ATPase superfamily signature 255 269 - -
Aip01g03298 875 PRINTS P-type cation-transporting ATPase superfamily signature 431 441 - -
Aip01g03298 875 PRINTS P-type cation-transporting ATPase superfamily signature 409 420 - -
Aip01g03298 875 PRINTS P-type cation-transporting ATPase superfamily signature 105 119 - -
Aip01g03298 875 PRINTS P-type cation-transporting ATPase superfamily signature 514 533 - -
Aip01g03298 875 PRINTS P-type cation-transporting ATPase superfamily signature 537 549 - -
Aip01g03298 875 Coils Coil 59 61 - -
Aip01g03298 875 SUPERFAMILY HAD-like 251 561 IPR036412 -
Aip01g03298 875 Pfam E1-E2 ATPase 103 234 - -
Aip01g03298 875 SFLD p-type atpase 237 566 IPR044492 -
Aip01g03298 875 SFLD C1.7: P-type atpase like 237 566 - -
Aip01g03298 875 PANTHER PLASMA MEMBRANE ATPASE 99 855 - -
Aip01g03298 875 Gene3D - 252 551 IPR023214 -
Aip01g03298 875 CDD P-type_ATPase_H 100 765 IPR006534 GO:0008553|GO:0016021|GO:0120029
Aip01g03298 875 PRINTS H+-transporting ATPase (proton pump) signature 371 389 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip01g03298 875 PRINTS H+-transporting ATPase (proton pump) signature 545 570 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip01g03298 875 PRINTS H+-transporting ATPase (proton pump) signature 514 530 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip01g03298 875 PRINTS H+-transporting ATPase (proton pump) signature 684 705 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip01g03298 875 PRINTS H+-transporting ATPase (proton pump) signature 486 502 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip01g03298 875 Gene3D - 824 875 - -
Aip01g03298 875 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 99 730 IPR006534 GO:0008553|GO:0016021|GO:0120029
Aip01g03298 875 SUPERFAMILY Calcium ATPase, transduction domain A 102 155 IPR008250 -
Aip01g03298 875 Coils Coil 826 846 - -
Aip01g03298 875 Gene3D - 267 414 IPR023299 GO:0000166
Aip01g03298 875 Gene3D - 99 142 - -
Aip01g03298 875 ProSitePatterns E1-E2 ATPases phosphorylation site. 257 263 IPR018303 -
Aip01g03298 875 PANTHER CALCIUM-TRANSPORTING ATPASE 99 855 - -
Aip01g03298 875 Gene3D - 143 739 - -
Aip01g03298 875 Pfam haloacid dehalogenase-like hydrolase 251 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03298 Aip-Chr1 136088041 136093934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03298 100 875 Primary Pumps ATPases AT2G18960 86.118 0.0 1388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03298 K01535 - gmx:100816905 1454.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03298 01 136088041 136093934 Aip04g01347 04 24741456 24749228 PCT