Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03284 ATGGACTCTTCCTCTTCTTTCTCTCTCTCCAACCACTCTTCTTCCTCTCCTCTCTCCCTCTTCCACCCCTCCTTCACCGACGCCGCCGATGTCCGATCAACTAACCTCTCCATATTCACCGGGGTCCCCAAGTTCGAGGACTTCCTCGGTGCCTCCGCTGCAACTGCACCCACCGCCACAGCACCATGTGCACCACCGCCCCCGCCCCCGCCGCCGCCGCAGCTTGCTCGGTTCTCCACCGACAACAACGGCGTCGTATATGACTCTGAGCTGAAGACAACGATAACCGCCTGCTTCCCTGGCGGTTTCGGCGGCGGAGCTGCAACTGGCGCTGAACTGAGTCAGAGGCCATCTCCAAAGAAAACTGTGGACACCTTCGGCCAACGCACCTCCATCTACCGCGGAGTCACAAGACATAGATGGACAGGGAGATATGAAGCTCATCTATGGGATAACAGCTGCAGAAGGGAAGGGCAAAGTAGGAAAGGAAGACAAGTTTATTTGGGTGGCTATGACAAGGAAGAGAAAGCGGCCAGAGCTTATGATCTCGCTGCTCTCAAGTACTGGGGTCCAACCACTACCACCAACTTTCCGGTTTCCAACTATGAGAAGGAGCTAGAGGAAATGAAGAACATGACAAGACAAGAGTTTGTTGCTTCTCTAAGAAGGAAGAGCAGTGGATTCTCTAGGGGGGCGTCTATATACAGAGGAGTGACTAGGCACCACCAGCATGGGCGATGGCAGGCAAGAATAGGCAGAGTAGCCGGAAACAAAGACCTGTACCTTGGCACTTTCAGCACGCAAGAAGAAGCTGCAGAGGCTTATGACATTGCAGCAATAAAATTCAGAGGACTCAACGCAGTCACCAACTTCGACATGAGTCGCTACGACGTCAAGAGCATTGCTAGCAGCACCCTTCCCATCGGCGGACTATCAAACAAGAACAAGAACTCCGCCGATGACCCTGTCGTCAGTCAACCACCACCACCACCACCGCCACCTTCAAGCTCCACCCTCAGCTTCGCCATTCCCATCAAACAAGACCCGTCCGCAGATTACTGGTCCATCATAGGCTACTCCAATAACACACAGCTGGAAAGTGCCAGGGGTACAACTGTAATTGCACCAGCAGCAACCTCTTTTCCTCGTCCCAACAACAATGGCAATGGCATGATGGACTTCTCCGCTGCCCCTTCAGCGGACGGATTCTTGAACGGAGGAGGGATCTTTGTTCATCATCATCAACAAGAGAGTGGTGGTGGTTCATCACCATCTTCGGGTGGTTCTTCAATCCCATTGGCAACGCCAATATTTACCTTAAATAGCAACAATAATTATGAGAACTGGATTGGGCCAACACTGCACACATTCCAAGCTCATGCAAAACCCAGTCTCTTTCAAACGCCAATATTTGGAATGGAATGA 1425 0.5214 MDSSSSFSLSNHSSSSPLSLFHPSFTDAADVRSTNLSIFTGVPKFEDFLGASAATAPTATAPCAPPPPPPPPPQLARFSTDNNGVVYDSELKTTITACFPGGFGGGAATGAELSQRPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIASSTLPIGGLSNKNKNSADDPVVSQPPPPPPPPSSSTLSFAIPIKQDPSADYWSIIGYSNNTQLESARGTTVIAPAATSFPRPNNNGNGMMDFSAAPSADGFLNGGGIFVHHHQQESGGGSSPSSGGSSIPLATPIFTLNSNNNYENWIGPTLHTFQAHAKPSLFQTPIFGME 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03284 474 Gene3D AP2/ERF domain 132 200 IPR036955 GO:0003700|GO:0006355
Aip01g03284 474 Gene3D AP2/ERF domain 234 294 IPR036955 GO:0003700|GO:0006355
Aip01g03284 474 MobiDBLite consensus disorder prediction 60 76 - -
Aip01g03284 474 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 111 321 - -
Aip01g03284 474 SUPERFAMILY DNA-binding domain 131 200 IPR016177 GO:0003677
Aip01g03284 474 MobiDBLite consensus disorder prediction 1 20 - -
Aip01g03284 474 MobiDBLite consensus disorder prediction 307 322 - -
Aip01g03284 474 MobiDBLite consensus disorder prediction 323 338 - -
Aip01g03284 474 ProSiteProfiles AP2/ERF domain profile. 234 292 IPR001471 GO:0003700|GO:0006355
Aip01g03284 474 ProSiteProfiles AP2/ERF domain profile. 132 198 IPR001471 GO:0003700|GO:0006355
Aip01g03284 474 SUPERFAMILY DNA-binding domain 233 294 IPR016177 GO:0003677
Aip01g03284 474 CDD AP2 131 200 IPR001471 GO:0003700|GO:0006355
Aip01g03284 474 MobiDBLite consensus disorder prediction 307 341 - -
Aip01g03284 474 CDD AP2 233 294 IPR001471 GO:0003700|GO:0006355
Aip01g03284 474 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 111 321 - -
Aip01g03284 474 SMART rav1_2 132 204 IPR001471 GO:0003700|GO:0006355
Aip01g03284 474 SMART rav1_2 234 298 IPR001471 GO:0003700|GO:0006355
Aip01g03284 474 MobiDBLite consensus disorder prediction 57 80 - -
Aip01g03284 474 Pfam AP2 domain 132 190 IPR001471 GO:0003700|GO:0006355
Aip01g03284 474 Pfam AP2 domain 234 284 IPR001471 GO:0003700|GO:0006355
Aip01g03284 474 PRINTS Ethylene responsive element binding protein signature 133 144 IPR001471 GO:0003700|GO:0006355
Aip01g03284 474 PRINTS Ethylene responsive element binding protein signature 274 294 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03284 Aip-Chr1 135944156 135947531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03284 68 474 AP2-EREBP Transcription Factor Family AT5G57390 55.856 8.15e-147 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Aip01g03284 AP2 3.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03284 K09285 - gmx:100797828 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03284 01 135944156 135947531 Aip01g03284 01 135944156 135947531 ECH