Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03283 ATGTATGCCAGCCAGTTTGACGGCAACGCCGCCTTCTCCGGCGGCGGTTTCATGCCCTCTCAGACCACTCAGTCCCATGACTCTTCCTCCACCTTCACTACTTCCAGAAATCGTGATGCTCAGTCGTTGCTACCTTTGACGGTGAAGCAGATAAACGATGCGGTATGCAACAAAAATGGGATGATTACTGAAGTTCATTTTGTCCTTGATGATGGCACTGGAAGGATTGAGTGTAATAAATGGCTTCAAGAAGCAGCGGAATCAAATGAAGTGGACGGTATCATGGATGGAGTGTATGTGCGTCTTCATGGACAATTAAAAGGCCTTAATGGGAAAAGGATTTTGAATGTTTTCTCATTTAGACCTGTGACTGACTTTAATGAGATTGCCAGCCATTTCATTGAATGTATATATGTCCATCTCTACAATTCCAAGCTAAAGGCTGCTGTGCCTAACCAGCAACATGTTACAAATTCAACACCAATAACACCCACAAAAGGTTACCAAGTTCTCCCACCAAATCAATTCTCTGGTCTGCATAACAATGGTCAGCCGAGGTTCGAAGAAATGGTCCTGGATTTTTTGCATCTTCCCCCACACAGTGCATCGGAAGGGGGAGTCTCTATTAAACTTATTGAAGAGCAACTTCGACTTCCTAAGGACAAGCTGATGTTGGCTATCAAAAATCTTATTGATGAAGGCCAGATTTATGAAGCTATAAGTGATCACTATAAGTCAACCATCAATGGTTGA 753 0.4316 MYASQFDGNAAFSGGGFMPSQTTQSHDSSSTFTTSRNRDAQSLLPLTVKQINDAVCNKNGMITEVHFVLDDGTGRIECNKWLQEAAESNEVDGIMDGVYVRLHGQLKGLNGKRILNVFSFRPVTDFNEIASHFIECIYVHLYNSKLKAAVPNQQHVTNSTPITPTKGYQVLPPNQFSGLHNNGQPRFEEMVLDFLHLPPHSASEGGVSIKLIEEQLRLPKDKLMLAIKNLIDEGQIYEAISDHYKSTING 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03283 250 Gene3D - 54 146 IPR012340 -
Aip01g03283 250 SUPERFAMILY "Winged helix" DNA-binding domain 183 247 IPR036390 -
Aip01g03283 250 CDD RPA2_DBD_D 55 141 - -
Aip01g03283 250 SUPERFAMILY Nucleic acid-binding proteins 43 144 IPR012340 -
Aip01g03283 250 MobiDBLite consensus disorder prediction 14 36 - -
Aip01g03283 250 PANTHER REPLICATION PROTEIN A-RELATED 2 55 IPR040260 -
Aip01g03283 250 PANTHER REPLICATION PROTEIN A-RELATED 55 247 IPR040260 -
Aip01g03283 250 Pfam Replication protein A C terminal 140 242 IPR014892 -
Aip01g03283 250 Gene3D - 179 248 IPR036388 -
Aip01g03283 250 PIRSF RPA32 54 248 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip01g03283 250 PIRSF RPA32 1 62 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip01g03283 250 MobiDBLite consensus disorder prediction 15 36 - -
Aip01g03283 250 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 2 55 - -
Aip01g03283 250 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 55 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03283 Aip-Chr1 135928774 135931547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03283 1 200 Core DNA Replication Machinery Family AT3G02920 45.022 7.90e-63 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03283 K10739 - gmx:100782819 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03283 01 135928774 135931547 Aip01g03283 01 135928774 135931547 ECH