Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03262 ATGCTCGTCCTCCGCAACTGCCCCGAATTCGCCCTCGCTTTCCTTGGCGCCTCCCGCTGCGGCGCCCCTGTCACGACCGCCAACCCCTTCTACACTCCCGCCGAGCTGGCCAAGCAAGCCACCGCCACCAAAACTAAGCTCATCATAACGCAATCCGCGTACGTAGAGAAATTCAAAGAGTACCTGGAAACTAACAACAACGACGTCAAGATCATGTGCATTGATGGTTCCCCTGAAGAATCACAGGACACTAGTGTTCTGCACTTTTCCCTTCTCACAAATTCCAATGAAAACGACGAGCCTGAAGTTAACATCACCACCGACGATCTCGTGGCGATCCCGTTCTCCTCCGGGACATCGGGGCTGCCAAAGGGGGTGATGTTAACGCACAGCAACCTGGTTACCACGGTGGCGCAACTTGTTGACGGCGAGAATCCTCATCAGTACACGCACAGCGAGGACGTTCTCCTCTGCGTGCTGCCAATGTTTCACATATACGCACTGAACTCGATCTTGTTATGTGGCATTCGAGCGGGTGCGGCGGTTCTGATCGTGCAGAAGTTTGAGATAACGACTCTGATGGAGTTGATAGAGAAGTACAGGGTGACGGTGGCGTCTCTGGTGCCGCCGATAGTGTTGGCGGTGGTGAAGAGTGGGGATACTCACAGGTATGATCTGTCTTCGATTCGTGGGGTGATATCAGGTGCCGCTCCCATGGGAATGGAGCTTCAGGAAGCTGTCAAGGCTAGGCTTCCCCATGCCATTCTCGGACAGGGTTATGGGATGACAGAAGCGGGGCCACTTGCCATAAGCTTAGCATTTGCAAAGGAACCATTCAACGTTAAATCAGGTGCATGCGGCTCCGTCGTTAGAAACGCTGAGATGAAAATCGTCGACACTGAAACTGGTACTTCCCTTCCACCAAACAAACCCGGTGAAATTTGCATTCGAGGCACTAAAGTCATGAAAGGGTACCTGAATGACCGAGAGGCGACGGAGAGAACCATAGACAAAGAAGGATGGTTACACACGGGTGACATTGGTTACATTGATGATGATGATGAGCTATTCATCGTTGATCGCTTGAAGGAGCTTATCAAATACAAAGGATACCAAGTGGCACCTGCTGAGCTGGAATCTTTGTTGATTGCCCACCCAAACATCTCTGATGCCGCTGTTGTACCGCTGAAAGATGAAGTTGCTGGAGAAGTACCAGTTGCATTTGTTGTGAGATCAAATGGTTCTAATATCACCGAGGATGAAATCAAGAAATATATTTCTAAACAGGTGGTATTTTACAAGAGAATAAACAGAGTGTTCTTCACTGAAAGTATTCCAAAAGCAGCGTCAGGAAAAATTCTGAGGAAGGTATTAACAGCAAGGCTTAACGAAGGTTTGGTGACCAATTAG 1410 0.495 MLVLRNCPEFALAFLGASRCGAPVTTANPFYTPAELAKQATATKTKLIITQSAYVEKFKEYLETNNNDVKIMCIDGSPEESQDTSVLHFSLLTNSNENDEPEVNITTDDLVAIPFSSGTSGLPKGVMLTHSNLVTTVAQLVDGENPHQYTHSEDVLLCVLPMFHIYALNSILLCGIRAGAAVLIVQKFEITTLMELIEKYRVTVASLVPPIVLAVVKSGDTHRYDLSSIRGVISGAAPMGMELQEAVKARLPHAILGQGYGMTEAGPLAISLAFAKEPFNVKSGACGSVVRNAEMKIVDTETGTSLPPNKPGEICIRGTKVMKGYLNDREATERTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGYQVAPAELESLLIAHPNISDAAVVPLKDEVAGEVPVAFVVRSNGSNITEDEIKKYISKQVVFYKRINRVFFTESIPKAASGKILRKVLTARLNEGLVTN 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03262 469 Gene3D - 363 466 IPR045851 -
Aip01g03262 469 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 1 462 - -
Aip01g03262 469 CDD 4CL 1 458 - -
Aip01g03262 469 ProSitePatterns Putative AMP-binding domain signature. 113 124 IPR020845 -
Aip01g03262 469 Gene3D - 1 362 IPR042099 -
Aip01g03262 469 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 1 462 - -
Aip01g03262 469 Pfam AMP-binding enzyme 2 368 IPR000873 -
Aip01g03262 469 Pfam AMP-binding enzyme C-terminal domain 377 452 IPR025110 -
Aip01g03262 469 SUPERFAMILY Acetyl-CoA synthetase-like 2 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03262 Aip-Chr1 135768556 135773748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03262 1 430 Monolignol Biosynthesis Gene Families AT1G51680 67.051 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03262 K01904 - gmx:548034 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03262 01 135768556 135773748 Aip01g03262 01 135768556 135773748 ECH