Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03236 ATGGGATCCTCCCTGAGTTGCTGTGGCTCTGACAAAATTGAAGAAGCAGCGCAAACAGCATTTGGTGCAGTTAACAACAATTCATGGAGAATATTCACATACAAGGAGCTGCATGCAGCTACAAATGGATTCAGTGAGGACAATAAGCTTGGTGAAGGTGGATTTGGAAGCGTGTATTGGGGAAAAACAAGTGATGGTCATGAGATAGCGGTGAAGAAACTGAAGGCAATGAACTCGAAGGCAGAGATGGAATTTGCTGTAGAAGTAGAAGTACTGGGAAGGGTTAGGCACAAGAATTTGTTGGGACTGAGAGGGTACTGTGCAGGGAATGAAGAAAGGCTTATAGTGTACGATTACATGGCGAATCTGAGCCTTCTTTCTCATCTGCATGGGCAGTTTACAAATGAAGTGCAACTGGATTGGAAAAGGAGAATGAAGATTGCAATTGGATCTGCAGAAGGTGTCTTGTATTTGCACCATGACGTCACACCACACATCATCCACAGAGACATCAAAGCAAGCAACGTTCTTCTCAACTCAGACTTCGAGCCGCTTGTTGCTGACTTCGGCTTCGCTAAGCTGATCCCCGAAGGGGTTAGCCACATGACTACCCGTGTTAAGGGCACTTTGGGATACTTGGCACCCGAATACGCCATGTGGGGAAAAGTCTCCGAGAGTTGCGATGTTTATAGCTTTGGGATTCTTCTGTTGGAGCTTGTAACTGGAAGAAAGCCGATTGAGAAGCTCCCTGGTGGGGTTAAGAGAACCATAACCGAATGGGCTGAGCCATTCATAAGTAAATCAAGGTTCGGGGATCTTGTTGATCCTAAACTCAGAGGTAACTTTGATGAGAATCAGGTGAAGCAAGCGATTCATGTGGCTGCACTTTGCGTGCAGAGTGAGCCTGATAAGAGACCCAACATGAAGCAAGTGGTTAACCTTCTCAAAGGGTATGAACCCAATCATAACGCTGTTTTGAACACTAGGCTTCACACTGTCAAATACACTGATACATTGATGCCACTTGATCAGCATGGTGATGATGATGATGCAACTAATAGCAGCGCCGGCTATGGTGTTTTTAGTGCCATTCAGGTTCAAAAGATGAACTTACCACCATAA 1122 0.4537 MGSSLSCCGSDKIEEAAQTAFGAVNNNSWRIFTYKELHAATNGFSEDNKLGEGGFGSVYWGKTSDGHEIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCAGNEERLIVYDYMANLSLLSHLHGQFTNEVQLDWKRRMKIAIGSAEGVLYLHHDVTPHIIHRDIKASNVLLNSDFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGVKRTITEWAEPFISKSRFGDLVDPKLRGNFDENQVKQAIHVAALCVQSEPDKRPNMKQVVNLLKGYEPNHNAVLNTRLHTVKYTDTLMPLDQHGDDDDATNSSAGYGVFSAIQVQKMNLPP 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03236 373 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Aip01g03236 373 SUPERFAMILY Protein kinase-like (PK-like) 28 327 IPR011009 -
Aip01g03236 373 ProSiteProfiles Protein kinase domain profile. 44 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g03236 373 CDD STKc_IRAK 50 317 - -
Aip01g03236 373 Gene3D Phosphorylase Kinase; domain 1 14 119 - -
Aip01g03236 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Aip01g03236 373 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 1 370 - -
Aip01g03236 373 PANTHER OS01G0750732 PROTEIN 1 370 - -
Aip01g03236 373 SMART serkin_6 44 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g03236 373 Gene3D Transferase(Phosphotransferase) domain 1 120 337 - -
Aip01g03236 373 Pfam Protein tyrosine and serine/threonine kinase 47 315 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03236 Aip-Chr1 135529682 135531531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03236 6 334 Trihelix Transcription Factor Family AT5G38560 44.638 3.28e-94 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Aip01g03236 Pkinase 1.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03236 - - ahf:112698754 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03236 01 135529682 135531531 Aip01g03236 01 135529682 135531531 ECH