Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03233 ATGGCTAATAACAAGAGCTTGTCATACCTTGTGGCATGGCTTGTCATAATGTTTTTGGTTGCGCCAAGTACAGCATCCATGGAAGAAACAGTGAAACTGCGAGTAGGGGTGCCCAAGAAAGAAGGCTTCCCGGAATTTGTGAACGTAATATTGGACGAAGATGAGCACAAGTACAATGTCACTGGATATTGCATGGATGTTTTCAATGCCGTATTAACAATCTTACCTTTCAAAGTTTCACTACAAATTGAAGCTTACGACGTTAATGAATCAACTGGAACATACGATGCACTAGTACAACAAATCCCCCAAAAGtatgatgttatggTAGGGGATATCACAATACTAGCGAAGCGTTCGAAGTTTGTTGATTTCACGTTGCCATATACAGAATCAGGAGTTCAAATGGTTGTAGCAGCAAGGCAGGGAAGGGAGCAAAGCATGTGGACTTTTGTGAAACCCTTCAGCTGGGATCTTTGGTTAAGCATAGTTGTCATGTCTATGTTCATAGGTTCTGTCATACTCATCATGGAAAGGAACAAGCAGGAGGTAGCCAATTCGCAACAACTAAGCCCAATCTACTTCTTATGGTTTCCAATTTCTCAAGCCGTTCTTCCTGAAAGAGAGGGAGTAGCGAAGAAGTGCTCGAGGTTTGTGTTGATGGTGTGGCTTCTATTGGCGTTTGTGCTGATGCAAAGCTACACGGCGAGCTTGACGACCATGATGACGGTGGAGCAGCTTCAACCGAGTTTTCTGAACGTGGATGATCTACGCACAGGGGATTACTATGTTGGATACCAAACTGGATCATTCGTTTATGATCTCTTGCTACACAAGTTGAAATTCAACGCTTCCAAGCTCAAGGCTATTGGCAGCATTTCTCAATATCACCAAGCTTTGAAGAATGGAAGCCGTGGCGGTGGCGTTTCCGCTATAGTCGATGAACTTCCCTACCTTAAACTCTTCCTTCAAAAATATGGATCTAATTACATGATCTCAGGTCCAACCTATCGAGCTGCTGGCTTTGGTTTTGCGTTTCCAATTAACTCCAACTTAACATCTTACTTTTCAAGAGCTATATTGAACGTTACCCAGAATGACAGTTTTATGCAACCGATTGAGATGAAGTATTTTGGAAGCAGTAACTATGATTTCGAAGATGATTCTTACCAGTTATCAACGTCAACATCATCAGATAGTACTCCTAGCCTTAACTCACAGAGTTTTGCGGGCTTGTTCATCATCACAGGAATTGCCACATTTTTAGCTTTGGTGGTTTCTGAAAGCAACATCTGGAGAAAACCCGTAACACTAGCCAAAGTCTACAGTCAAAAGTTTCTTCTAATGTCTCCTAGTTGGGCAAAATCTAAACAATCTATGGATGTTTCTACAAAGCAAGGGAATAAAATATGTTCTATCAGTGAACCAAATAGCATTCCTGAAAGTCCATCAAGGTTTCCAAAGTCTAATCTTGCTCTAGACACAGTTGTATAG 1494 0.413 MANNKSLSYLVAWLVIMFLVAPSTASMEETVKLRVGVPKKEGFPEFVNVILDEDEHKYNVTGYCMDVFNAVLTILPFKVSLQIEAYDVNESTGTYDALVQQIPQKYDVMVGDITILAKRSKFVDFTLPYTESGVQMVVAARQGREQSMWTFVKPFSWDLWLSIVVMSMFIGSVILIMERNKQEVANSQQLSPIYFLWFPISQAVLPEREGVAKKCSRFVLMVWLLLAFVLMQSYTASLTTMMTVEQLQPSFLNVDDLRTGDYYVGYQTGSFVYDLLLHKLKFNASKLKAIGSISQYHQALKNGSRGGGVSAIVDELPYLKLFLQKYGSNYMISGPTYRAAGFGFAFPINSNLTSYFSRAILNVTQNDSFMQPIEMKYFGSSNYDFEDDSYQLSTSTSSDSTPSLNSQSFAGLFIITGIATFLALVVSESNIWRKPVTLAKVYSQKFLLMSPSWAKSKQSMDVSTKQGNKICSISEPNSIPESPSRFPKSNLALDTVV 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03233 497 CDD GluR_Plant 32 378 - -
Aip01g03233 497 Pfam Ligand-gated ion channel 380 419 IPR001320 GO:0015276|GO:0016020
Aip01g03233 497 Gene3D - 148 286 - -
Aip01g03233 497 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 5 453 - -
Aip01g03233 497 MobiDBLite consensus disorder prediction 474 489 - -
Aip01g03233 497 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 5 453 - -
Aip01g03233 497 SMART GluR_14 32 380 IPR001320 GO:0015276|GO:0016020
Aip01g03233 497 SUPERFAMILY Periplasmic binding protein-like II 7 380 - -
Aip01g03233 497 MobiDBLite consensus disorder prediction 474 497 - -
Aip01g03233 497 Pfam Bacterial extracellular solute-binding proteins, family 3 58 379 IPR001638 -
Aip01g03233 497 Gene3D - 26 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03233 Aip-Chr1 135483329 135499800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03233 32 426 Ion Channels AT5G11210 38.308 1.88e-88 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03233 K05387 - aip:107641909 582.408