LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip01g03227	ATGGATCTTCGAGTACGACGCCGACAGCCTGTATCTGCAGCTGAAGGATGGGTTCCCCTCCGACGTGGAGGTCCTGTACGTAGGGTCCCTGAAGGCCGACGTGGAGGCTTCCGAGCAGGACGAGGTGTCGATCTGTGGCCCCTGTTTCATTACATGCTTCCCATGTCTCCCAGCCACGGCGCCCGCTTCGACCGCGCCCAGTGGCAGGCCTACGTCCTGGCCAACAAGATCTTCGCCGATAAGGTGACGGAGGTCATAAACCCCGACGAGGATTTCGTGTGGGTTCACGATTACCACCTGATGATACTGCCCACTTTCTTGAGGAAAAGGTTCCACCGCGTGAAGCTAGGGTTCTTCTTGCACAGTCCCTTCCCTTCTTCGGAAATCTACAGGACTCTACCTGTTCGTGATGACATACTGAGAGCCTTCTTGAACTGCGACCTGGTTGGTTTCCACACCTTCGATTACGCCAGACACTTCTTGTCCTGCTGCAGCAGGATGCTTGGTTTGGACTACGAGTCTAAAAGAGGTTACATTGGCTTGGATTATTATGGAAGAACCGTCACTATTAAGATTCTCCCCGTTGGGATTCACATGGGGCAGCTTCGCTCCGTGTTGTCTCTGCCGCGCACGGCCAAGAGGGTGGAGGAGTTGAAGGTGGAGTATGAGGGCAAGGTTGTCATTCTTGGCGTCGATGACATGGACTTGTTCAAAGGTATCAGCTTGAAGTTCTTGGCAATGGGGCAGCTTCTTGAGGTGCATGAGGCTCTGAGAGGGAAGGTTGTGTTGGTTCAGATTCTGAACCCCGCCAGGAGCTCAGGGAAGGATATTCAAGACGTCAAGAATGAGTCCGAGGCCCTTGCTAAGGAGATTAACGACAAATATGGTAGGCCGGGTTACCAGCCAATTGTGTTTGTGAATGGTCCAGTTTCAACGGAGGATAAGGCTGCTTACTATGCAATTTCCGAGTGTTGTGTGGTGAATGCGGTGAGGGATGGCATGAACTTGGTGCCTTACACATACACCGTTTGCAGGCAGATAGTTGAGAGTGAGAGGCCTAATCAGAGTGTTATCATTGTATCTGAGTTCATCGGTTGCTCGCCCTCCCTCAGCGGAGCAATCAGGGTCAATCCTTGGAACATTGATGATGTCTCCGAGGCTATGAACTCCGCCATCACAATGCCGGACGGGGAGAAGCATTTGCGCCACGAGAAGCATTACAAGTACATAAGCTCCCATGATGTGGCCTATTGGGCCAGGAGTTTTGATCAGGATTTGGAGAGGGCTTGTAGGGAGCATTACCTCAAGAGGTATTGGGGTGTTGGTTTTGGTCTCGGATTCAGGATCGTTGCTTTGGATCCTACCTTTAGGAAGCTCTCAGTCGATAACATTGTCTCTGCATACAAAGCTACACACAGCCGCTTGATCCTTTTGGACTATGATGGCACTATGTTGCCTCAGGCATCCATAAACAAGACCCCAAGTCCTGAGGTTTTATCTGTATTGAACTATTTATGCAGTGATCCCAAGAATATGGTGTTCATTGTGAGTGGCAGAGACAAGGATTGCCTCGGCAAGTGGTTTGATCCTTGTGACAAGTTGGGCCTCTCAGCAGAACATGGTTACTTCACTAGGTTGAGGAGGGATACTCCTTGGGAGACATGCGGGTTGACAACTGATTTTGACTGGAAGAAGATGGCAGAACCTGTGATGGCGCATTACACAGAGGCAACGGATGGTTCTTTCATTGAACACAAGGAGAGTGCAATGGTTTGGCACCATCAAGAAGCCGATCCTTATTTTGGATCATGCCAAGCCAAAGAGCTTCTTGATCACCTTGAGAATGTGCTGGCCAATGAGCCTGTTGTTGTTAAAAGGGGACAACACATAGTTGAAGTGAAACCTCAGGGTGTGAGCAAGGGTATAGTTGTGGAAAATCTAATCTCAAGCATGAGGAGTGAGGGTAAATCACCAGATTTTCTGTTGTGCATTGGGGATGATCGATCAGATGAAGACATGTTCGAAAGCATTGCTCGTTCAGTTTCTAATCCAGCACTTCCAACAATATCACAAGTGTTTGCATGCACGGTTGGCCAGAAACCAAGCATGGCAAAGTACTATTTGGAGGATACGAGTGAAGTTATCAAGTTGCTACAAGGACTTGCTACTGCATCAGCACCCTCAGCTTTTCAAGAATCGCAACAAGGATCACTATAG	2217	0.4935	MDLRVRRRQPVSAAEGWVPLRRGGPVRRVPEGRRGGFRAGRGVDLWPLFHYMLPMSPSHGARFDRAQWQAYVLANKIFADKVTEVINPDEDFVWVHDYHLMILPTFLRKRFHRVKLGFFLHSPFPSSEIYRTLPVRDDILRAFLNCDLVGFHTFDYARHFLSCCSRMLGLDYESKRGYIGLDYYGRTVTIKILPVGIHMGQLRSVLSLPRTAKRVEELKVEYEGKVVILGVDDMDLFKGISLKFLAMGQLLEVHEALRGKVVLVQILNPARSSGKDIQDVKNESEALAKEINDKYGRPGYQPIVFVNGPVSTEDKAAYYAISECCVVNAVRDGMNLVPYTYTVCRQIVESERPNQSVIIVSEFIGCSPSLSGAIRVNPWNIDDVSEAMNSAITMPDGEKHLRHEKHYKYISSHDVAYWARSFDQDLERACREHYLKRYWGVGFGLGFRIVALDPTFRKLSVDNIVSAYKATHSRLILLDYDGTMLPQASINKTPSPEVLSVLNYLCSDPKNMVFIVSGRDKDCLGKWFDPCDKLGLSAEHGYFTRLRRDTPWETCGLTTDFDWKKMAEPVMAHYTEATDGSFIEHKESAMVWHHQEADPYFGSCQAKELLDHLENVLANEPVVVKRGQHIVEVKPQGVSKGIVVENLISSMRSEGKSPDFLLCIGDDRSDEDMFESIARSVSNPALPTISQVFACTVGQKPSMAKYYLEDTSEVIKLLQGLATASAPSAFQESQQGSL	738

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip01g03227	738	TIGRFAM	T6PP: trehalose-phosphatase	473	722	IPR003337	GO:0003824\|GO:0005992
	Aip01g03227	738	Pfam	Trehalose-phosphatase	477	712	IPR003337	GO:0003824\|GO:0005992
	Aip01g03227	738	CDD	HAD_TPP	475	716	-	-
	Aip01g03227	738	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 11-RELATED	45	727	-	-
	Aip01g03227	738	CDD	GT20_TPS	45	427	IPR001830	GO:0003824\|GO:0005992
	Aip01g03227	738	Gene3D	Glycogen Phosphorylase B;	43	210	-	-
	Aip01g03227	738	Gene3D	Glycogen Phosphorylase B;	211	412	-	-
	Aip01g03227	738	SUPERFAMILY	HAD-like	474	722	IPR036412	-
	Aip01g03227	738	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	475	679	IPR006379	-
	Aip01g03227	738	Gene3D	-	603	735	IPR023214	-
	Aip01g03227	738	Gene3D	-	473	590	IPR023214	-
	Aip01g03227	738	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	45	727	IPR001830	GO:0003824\|GO:0005992
	Aip01g03227	738	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	45	431	-	-
	Aip01g03227	738	Pfam	Glycosyltransferase family 20	45	427	IPR001830	GO:0003824\|GO:0005992

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip01g03227	Aip-Chr1	135343036	135346356	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip01g03227	45	737	Trehalose Biosynthesis Gene Families	AT2G18700	70.312	0.0	1042

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip01g03227	K16055		-	gmx:100810498	1244.95