Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03224 ATGCCTCCTCAGCGTGATTCCCTACCCAAACCCAACCCTAATATCTTATCCTTCTTCCTCAAGCCAATCATCATGCTCCTCCTTACCACCCTATTCTTCCTCTTCCTTGGCTTCGCCGCTTTCATCCTCCTTCACCTCTTCCTCATCGGCGGCGCCCTCCACCGCCTCCGCTCCCGCCCCTACTCCTCCTCCTCCTCCCTCCACCCCTCCCCTTCCGACACCCTCTCCCCGCACCACCTCAGCAAGCTCCCCCACTTCCGCGTCTCTAGAGGATCCCCATACCCCGCTCCCGATTCCCGCTGCGTCGTCTGCCTCGACGGCTTCCGCAACGGCCAGTGGTGCAGGAACCTCGCCGGTTGCGGCCACGTCTTTCATCGGAGGTGCGTCGACACGTGGCTCGTCAAGGTTGCCGCTTGCCCCACATGCCGGACACCTGTTCGATTAAATGCCGCGGTAAAAAGAGACGATCACGGTCGCCAATTAGGGACCTGTGCTACAGCTGACTCCAACGCGCTTCCCACTTCATAG 528 0.6042 MPPQRDSLPKPNPNILSFFLKPIIMLLLTTLFFLFLGFAAFILLHLFLIGGALHRLRSRPYSSSSSLHPSPSDTLSPHHLSKLPHFRVSRGSPYPAPDSRCVVCLDGFRNGQWCRNLAGCGHVFHRRCVDTWLVKVAACPTCRTPVRLNAAVKRDDHGRQLGTCATADSNALPTS 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03224 175 Pfam Ring finger domain 100 143 IPR001841 -
Aip01g03224 175 SUPERFAMILY RING/U-box 96 149 - -
Aip01g03224 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 148 IPR013083 -
Aip01g03224 175 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Aip01g03224 175 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 4 153 - -
Aip01g03224 175 SMART ring_2 101 142 IPR001841 -
Aip01g03224 175 PANTHER RING-H2 FINGER PROTEIN ATL56 4 153 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03224 10 148 C3H Transcription Factor Family AT2G18670 49.640 1.81e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03224 - - gmx:102664895 166.007