Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03223 ATGGCTAAAGGAGACAGCTTTGTGTCTCCATCACAAGAACCATCTTTTTTTCTTCCTCACCCAAACCCACCACCACCACCACCACCACGTTCCCTTCCAACTCCCTCTGTTATTCGATCTGACAGTTTCAGCTTCAACGATAAGGCCTTGAAGGTTAGTCCAAGCATACTCCTCATCATCATCATCCTGGCCATTGTTTTCTTCGTTTCTGGTTTGCTTCACCTACTTATTAGGTTCCTATGGAGGCCTCAGAGTAGAGACCCTGATGATTTTGACAATGGCACTGCGCTTCAAGGCCAATTGCAGCAACTCTTCCATCTCCATGATGCTGGTGTTGATCAGTCCTTCATAGACACGCTCCCTGTGTTCCACTACAAAGCCATCATAGGCTTGAAGAACCCTTTTGATTGTGCCGTTTGTTTGTGTGAGTTTGAACCAGAAGACAAGCTTAGATTGTTGCCCAAATGTAGCCATGCTTTTCACATGGAGTGCATTGACACATGGCTTTTGTCTCATTCTACTTGTCCTCTCTGTAGAGCTAGCTTGCTCCCTGATTTCTCTGCTAACAACACCAGCAACACGTGTTCCCCCATTGTTCTTGTCCTCGAATCCGGGAGTGAGAGTTCTAGGGAGATTATTGCTCCCGAAAGAGATAGTACTGCTGCTGCAGCTGTTGCAAGAACAAGCTCTGTCATAACATCGAATTCCTGTGAATTTGGATCATCAACAAGGATTGATTTTCAAAACAAATCAGGTGAGTTGACTTCTTCGGGTGACAGCAACAAAGTTCTTAATATTGATGCAAATGGTGTGGAGAAAGTGGTGACTGTGAAGCTGGGCAAGTTTAGGAATGTTGATGGTGGTGGTGGAGAAGGAAGCAGTAGCAGCAACAACAATGTGGATGGAAGGAGGTGCTTCTCAATGGGGTCATTTGCTTATGTTATGGATGAGAGTTCTTCACTACAGGTACCAATAAGAACCCCAATGAAGAAGAAACAGTCAAATAGTAAAAAGAAGAGTTCTTTGCCTTTGACACCAGGGCACAGGCCAGCAATGTCAGAATATGACTCTGAGTCCAGAAGGGATTTCAGATTTGCATGCTTTGATGCCTCTAAAATTGAGGATTTTGGTGGTGCTGAAAGTAGTAACACTAATTGTAATGGGGCTGCAATTGGAAGGAGCAGAATAGAGAGCTTCTCTATATCAAAGATTTGGCTGAGAGGGAAGAAGGAGGAGAAGCAAAATGCAGCTGGAGATTCGTCCAGAAGAGCTGTTTCATTCCGGTTTCCTACGCCACAGAAGAACGCTGTTGGTTCTTCAGAAGAGATGAAGGCTAATAAGAATGTGAAATTTGATACAAGTAGTACTATTTCAGAGATGGATATTGCTAAATGGGAGAATGGAGGAAGTGAATATGGGTTTGATGAAGAAAGCCAAAGCTGCAATAGTATTGATTCTCAAGCTAGAGCTCCTTCATTTGCTAGAAGGACTTTGCTTTGGCTCACTGGAAGACAGAACAAGGTTGTTCACTCTTCTTCTGATTCCAGCATCTAG 1554 0.4382 MAKGDSFVSPSQEPSFFLPHPNPPPPPPPRSLPTPSVIRSDSFSFNDKALKVSPSILLIIIILAIVFFVSGLLHLLIRFLWRPQSRDPDDFDNGTALQGQLQQLFHLHDAGVDQSFIDTLPVFHYKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPDFSANNTSNTCSPIVLVLESGSESSREIIAPERDSTAAAAVARTSSVITSNSCEFGSSTRIDFQNKSGELTSSGDSNKVLNIDANGVEKVVTVKLGKFRNVDGGGGEGSSSSNNNVDGRRCFSMGSFAYVMDESSSLQVPIRTPMKKKQSNSKKKSSLPLTPGHRPAMSEYDSESRRDFRFACFDASKIEDFGGAESSNTNCNGAAIGRSRIESFSISKIWLRGKKEEKQNAAGDSSRRAVSFRFPTPQKNAVGSSEEMKANKNVKFDTSSTISEMDIAKWENGGSEYGFDEESQSCNSIDSQARAPSFARRTLLWLTGRQNKVVHSSSDSSI 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03223 517 Pfam Ring finger domain 136 179 IPR001841 -
Aip01g03223 517 CDD RING-H2_PA-TM-RING 136 179 - -
Aip01g03223 517 MobiDBLite consensus disorder prediction 16 33 - -
Aip01g03223 517 SMART ring_2 137 178 IPR001841 -
Aip01g03223 517 SUPERFAMILY RING/U-box 116 188 - -
Aip01g03223 517 MobiDBLite consensus disorder prediction 1 33 - -
Aip01g03223 517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 184 IPR013083 -
Aip01g03223 517 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Aip01g03223 517 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 8 426 - -
Aip01g03223 517 MobiDBLite consensus disorder prediction 323 357 - -
Aip01g03223 517 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 8 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03223 Aip-Chr1 135306468 135308363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03223 71 513 C3H Transcription Factor Family AT2G18650 44.348 1.00e-98 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03223 - - gmx:100797283 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03223 01 135306468 135308363 Aip01g03223 01 135306468 135308363 ECH