Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03196 ATGGGAAAGGCGTCACAAGTTAACAAGAACAATAATCATAATCTTAGTGTAATCAATGGCAGTACTACCAAGGTGAAACGTACCAGGAGGAGTGTCCCTAGAGACTCTCCACCTCAAAGAAGCTCGATTTACAGAGGAGTCACTCGGCATAGGTGGACGGGAAGATATGAAGCTCATCTGTGGGACAAGAATTGCTGGAATGAGTCTCAGAACAAGAAGGGACGACAAGTCTACCTTGGTGCTTATGACGATGAAGAGGCCGCAGCACATGCTTATGATCTTGCAGCACTCAAATACTGGGGTCAAGATACCATTCTCAATTTTCCGGTATCGAAGTACCAGAATGAATTGAAAGAAATGGAGGGTCAATCAAGGGAGGAGTATATTGGATCACTAAGGAGGAAAAGCAGTGGATTTTCCCGGGGAGTTTCTAAATATAGAGGTGTTGCAAGACATCATCATAACGGAAGATGGGAGGCTCGGATAGGCAGAGTTTTTGGGAATAAATATCTCTATCTTGGAACTTATGCTACACAAGAAGAAGCTGCCACTGCCTATGACATGGCTGCTATTGAATACCGTGGACTTAACGCCGTCACCAATTTCGATCTCAGCCGTTACATTAAGTGGCTTAAGCCTAACAATAACAGCAACGAAAATGATCATAATAATAATAACAACAGGATTAGTTTTAATCTTGCTGCTGCTGTTGCCGTTGATGACGTCAACCCTAATTGCAATAACACCAACTTCACACCAAACTTCAATAATAATAATAAGGAACACGAATATAGCCTCTTCAACCACGAACCATTATTCATTAATAATAATAATATTGATAATAATAATAATATTAATAATAATAATGGAAGTAAGTTGGGTCAGGCTCGACCTGGTGCCACGTCAGCCCTAGAGCTTCTGCTTCAGTCGTCCAAGTTTAAGGAAATGATGGAGATGACGTCATCAGTGGCGAATAACAATAATCCATCAACACCAGCAGAGTGTAGTGATGAGTTGCCACAGTGCAATTTCCCTGAAGACATTCAAACTTATTTTGAGTATGAAGATTCAAATAAGTATGAAGGAGGAGATCATGATACGTTGTTCAACGAGATCCACTCGTTCGTGCCAATGTTCCACTGCGATGACTTCGAGAATTGA 1161 0.4117 MGKASQVNKNNNHNLSVINGSTTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGQDTILNFPVSKYQNELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNNSNENDHNNNNNRISFNLAAAVAVDDVNPNCNNTNFTPNFNNNNKEHEYSLFNHEPLFINNNNIDNNNNINNNNGSKLGQARPGATSALELLLQSSKFKEMMEMTSSVANNNNPSTPAECSDELPQCNFPEDIQTYFEYEDSNKYEGGDHDTLFNEIHSFVPMFHCDDFEN 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03196 386 MobiDBLite consensus disorder prediction 1 42 - -
Aip01g03196 386 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Aip01g03196 386 PRINTS Ethylene responsive element binding protein signature 185 205 IPR001471 GO:0003700|GO:0006355
Aip01g03196 386 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 369 - -
Aip01g03196 386 SMART rav1_2 43 115 IPR001471 GO:0003700|GO:0006355
Aip01g03196 386 SMART rav1_2 145 209 IPR001471 GO:0003700|GO:0006355
Aip01g03196 386 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 369 - -
Aip01g03196 386 CDD AP2 42 111 IPR001471 GO:0003700|GO:0006355
Aip01g03196 386 MobiDBLite consensus disorder prediction 1 26 - -
Aip01g03196 386 Pfam AP2 domain 43 101 IPR001471 GO:0003700|GO:0006355
Aip01g03196 386 Pfam AP2 domain 144 195 IPR001471 GO:0003700|GO:0006355
Aip01g03196 386 ProSiteProfiles AP2/ERF domain profile. 43 109 IPR001471 GO:0003700|GO:0006355
Aip01g03196 386 CDD AP2 144 205 IPR001471 GO:0003700|GO:0006355
Aip01g03196 386 SUPERFAMILY DNA-binding domain 42 111 IPR016177 GO:0003677
Aip01g03196 386 SUPERFAMILY DNA-binding domain 144 205 IPR016177 GO:0003677
Aip01g03196 386 Gene3D AP2/ERF domain 144 205 IPR036955 GO:0003700|GO:0006355
Aip01g03196 386 Gene3D AP2/ERF domain 43 111 IPR036955 GO:0003700|GO:0006355
Aip01g03196 386 ProSiteProfiles AP2/ERF domain profile. 145 203 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03196 Aip-Chr1 135054494 135056799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03196 3 207 AP2-EREBP Transcription Factor Family AT5G57390 64.878 2.10e-91 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Aip01g03196 AP2 8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03196 K09285 - gmx:100804555 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03196 01 135054494 135056799 Aip01g03196 01 135054494 135056799 ECH