Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03178 ATGGAAGCCAGCGCCGGACTTGTCGCTGGCTCTCATAACCGCAATGAGCTTGTTGTCATTCATGGCCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGTCAAGTGTGTGAGATATGTGGTGATGAGGTGGGACTCACGGTGGATGGAGACTTGTTTGTGGCCTGCAATGAGTGTGGTTTTCCGGTGTGCCGGCCGTGCTATGAGTATGAAAGGAGGGAAGGCAGCCAACTTTGTCCACAATGCAAAACCAGATACAAGCGTCTCAAGGGGAGTCCAAGGGTGGAGGGAGATGAAGATGAGGAGGATGTGGATGATATTGAACATGAATTTAACATTGAGGACGAAAGGAACAAGCATGACCATTCTGCAGAAGCCATGCTGTATGGGAAGATGAGCTATGGAAGAGGTCCTGAAGATGAAGATAATGCTCAATTCCCAGCTGTCATTTCTGGTGGTCGATCTCTTCCTGTGAGTGGAGAGTTATCAGCAGCGGGATCTCATGCTTATGGAGAGATGTTATCTTCTTCATTGCATAAAAGAGTGCATCCATATCCAGTTTCTGAACCTGGAAGTGAAAGATGGGATGATAAGAAAGATGGATGGAAAGAAAGGATGGATGATTGGAAACTTCAACAAGGCAATTTAGGCCCTGAACCTGATGAAGATTTTGATGCAGCCTTGTTGGATGTAACAAGGCAACCACTATCAAGGAAGGTACCAATTGCATCTAGCAAAGTGAATCCATATAGGATGGTGATTGTGGCGCGGCTTGTTATTCTTGCATTCTTTCTAAGATATCGAATTCTGAACCCGGTTCATGATGCACTGGGGCTATGGCTAACTTCCATTATATGTGAAATCTGGTTTGCTTTTTCATGGATCCTTGATCAGTTCCCTAAATGGTTTCCAATTGACAGAGAGACCTACCTTGACCGTCTTTCAATCAGGTATGAGCGTGAAGGTGAACCAAACATGCTTGCTCCTGTAGATGTGTTTGTGAGTACTGTGGACCCTATGAAGGAACCTCCTCTTGTTACAGCAAACACTGTTCTTTCAATCTTGGCCATGGATTACCCTGTTGACAAGATATCATGCTACATTTCTGATGATGGTGCTTCAATGTGTACATTTGAAGCCTTATCAGAAACTGCAGAGTTTGCTAGGAAGTGGGTACCATTTTGCAAGAAATTTTCCATAGAACCAAGGGCACCGGAGATGTACTTCTCTGAGAAAATTGACTACCTCAAGGACAAAGTGCAACCAACTTTTGTTAAGGAGCGGCGCGCAATGAAGAGAGAATATGAAGAGTTTAAGGTGAGGATCAATGCACTTGTGGCTAAAGCACAGAAGGTTCCTCCAGGAGGGTGGATCATGCAGGATGGGACACCATGGCCAGGAAACAATACTAAGGATCATCCTGGTATGATTCAAGTATTTCTTGGCCACAGTGGAGGCCATGACACTGAAGGAAATGAGCTTCCTCGTCTCGTCTATGTCTCCAGGGAGAAAAGGCCTGGTTTTCAGCACCACAAGAAAGCTGGTGCCATGAATGCTCTGATTCGGGTCTCTGCTGTGCTTACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCACTATGTCAATAACAGCAAAGCTGTCCGAGAGGCCATGTGCTTTTTAATGGACCCTCAAACTGGGAAGAAAGTCTGCTATGTCCAATTTCCTCAGAGATTTGATGGTATCGATACACATGATCGGTATGCTAACAGGAACACAGTTTTCTTTGATATTAACATGAAGGGATTGGATGGAATTCAGGGTCCTGTATATGTGGGCACAGGTTGTGTATTCAGGAGGCAAGCTTTATATGGATACAATCCTCCAAAGGGTCCTAAACGTCCAAAAATGGTAAGTTGTGACTGTTGTCCATGCTTCGGAAAGCGTAAGAAGGCAAAGCATGCAAAGAATGATGCAATTGCAGAGGCTGCAAACCTTAAAGTAATGGAGGATGACAAAGAGTTGCTCATGTCCCAAATGAATTTTGAGAAGAAATTTGGGCAGTCATCTATTTTTGTGACCTCAACTTTGATGGAAGATGGTGGTGTACCTCCTTCATCAAGTCCAGCAAGCCAGCTTAAAGAAGCCATTCATGTAATCAGTTGTGGTTATGAAGATAAAACTGAATGGGGAATTGAGCTAGGTTGGATCTATGGTTCTATTACAGAGGATATTCTAACAGGTTTCAAGATGCATTGCCGTGGTTGGAGATCCATTTACTGCATGCCAAAGAGAACAGCATTCAAGGGTACTGCTCCCATCAACTTGTCAGATAGGCTTAACCAGGTGCTTCGTTGGGCACTTGGATCCATCGAGATCTTCTTCAGTCGCCATTGCCCGTTATGGTATGGCTACAAGGAAGGGAAGCTAAAGTGGCTTGAGAGATTTGCATATGCAAACACAACTGTCTACCCATTCACATCCATACCTCTGGTTGCATACTGTATTCTTCCTGCTGTCTGCTTACTCACTGACAAATTCATCATGCCGCCGATAAGCACTTTTGCTGGTTTGTACTTTGTTGCTCTCTTCTCTTCAATCATTGCAACTGGCATTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAAGAATGGTGGAGAAATGAACAATTCTGGGTCATTGGTGGTGTATCAGCACATCTCTTTGCTGTCATACAAGGTCTTCTGAAGGTGTTGGCTGGAATTGACACCAACTTCACTGTCACATCCAAGGCTGCAGACGATGAAGAATTTGGAGAGTTATACACCTTCAAGTGGACTACTCTCTTGATTCCTCCAACTACAATCTTAATAATCAACATTGTTGGGGTTGTTGCTGGAATCTCAGATGCAATAAACAATGGTTACCAATCATGGGGACCTCTCTTTGGAAAACTCTTCTTCTCCTTCTGGGTGATTGTCCATCTATATCCATTCCTTAAAGGTTTGATGGGTCGGCAAAACCGCACACCTACCATAGTTGTGATATGGTCAGTGCTACTGGCTTCCATCTTCTCGTTGCTCTGGGTAAGAATTGATCCATTTGTGACGAAAACTAAAGGACCTGATACCAAGATGTGTGGAATAAACTGCTGA 3117 0.4408 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDEVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDEDEEDVDDIEHEFNIEDERNKHDHSAEAMLYGKMSYGRGPEDEDNAQFPAVISGGRSLPVSGELSAAGSHAYGEMLSSSLHKRVHPYPVSEPGSERWDDKKDGWKERMDDWKLQQGNLGPEPDEDFDAALLDVTRQPLSRKVPIASSKVNPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPPGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYVNNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGKRKKAKHAKNDAIAEAANLKVMEDDKELLMSQMNFEKKFGQSSIFVTSTLMEDGGVPPSSSPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRTAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPLWYGYKEGKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVTKTKGPDTKMCGINC 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03178 1038 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 476 621 IPR029044 -
Aip01g03178 1038 Pfam Cellulose synthase 330 1032 IPR005150 GO:0016020|GO:0016760|GO:0030244
Aip01g03178 1038 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Aip01g03178 1038 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Aip01g03178 1038 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Aip01g03178 1038 SUPERFAMILY RING/U-box 21 107 - -
Aip01g03178 1038 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Aip01g03178 1038 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1038 - -
Aip01g03178 1038 Coils Coil 428 448 - -
Aip01g03178 1038 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 1038 - -
Aip01g03178 1038 SUPERFAMILY Nucleotide-diphospho-sugar transferases 343 805 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03178 Aip-Chr1 134903804 134908923 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03178 1 1038 Cell Wall Biosynthesis AT5G17420 86.141 0.0 1844
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03178 K10999 - gmx:100815436 2000.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03178 01 134903804 134908923 Aip01g03178 01 134903804 134908923 ECH
Aip03g02905 03 80441886 80449591 Aip01g03178 01 134903804 134908923 PCT