Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip01g03168 | ATGGACTTCAACCACCGAGCTATTGGGGTTACGCCACCGACGCAGTCCTTATACACGGCCTTCCCTCCTCCCCCTCCTTCTCCCGCCACCGCCGTCTACTCCGACCGATTGTTGCGAGGTGAGTTTCTAAACATGGTTTCAATGCCGCTGACCAATGCGGTTGCCGGAGACTCCATGCGGGAACTGGAGAAGGCGCAGATACGGCGAGAGATGATTGCCAGCGGCGTTGCACGGAGGATTCAGCTTGAAGCTGAGGTGAGGAGGGAGCTCGCCTTGGAAGCATTGTTGGGAATTCTTCCAATGCAGAGAGGAAATCTGAGTGAATCAGTGCAGCTTCAGCCACCGCCACCGCCACCGCCACCGCCACCGCCACCGCGTCGATCCTTGGTTGAGGAGAGAGTGGCAATGAGTTTAAATAACCGTTTCAATAGTACATTTGCCCCACCAAAATCACAACAGTTGCAGCAACTCATGGCTCCTGTGAAGATAGAGCCTTGTCCTGAAGAGACTAGCAAGAAGGATAAAGTGATCATACTGGACAAGCCAAACCCAGCTCTCCATTCCAGAAAGCAGAAAGCTGTAATACCCCCGCTTGATGAGCATCGTAAACCCAAGGAAGTGTGGAGTTGTGCGCTATGTCGGGTTAGTGCTCCAAATCAGGGAGTCTTTAGTGCACATGTTCAGGGTAGGAAGCACAAGGCCAAGGAAGCATCATTGAGACAACAGAACAATAGTAAGAGCACCGACATGTCCGCGTCGTCAAAGAGAAGAAAGTTTAATGAGTTTACTGCATCCATTGCTGCCACAATATCAAGGTCAAACGCAGAAGCAGATCAGCAGGTGAAGAATCTAAATATGGTTGATACAGCTAGAGTAGAATCTAAAGAAGAGGAGCAGCCTGAGCAGAACAGGCAAAATATAGAACCTCTGAAGAACAAGAATGGTACAACAACCACCATTGGTGACCAAGCGGAGAGAATAAATGCATTAAAGAAAATACACGCGAAATTTTGGTGTGAAACGTGTCAGGTTGGAGTTTGGGCAGAAGCTGTGATGGAAGACCACTTGAAAGGGAAAAAGCACCTGAACCAGATGAAGAGACTTGGTGCAAACCATTCGAGTTCCGCATCTTCCAACATCACAAGAAGCTCCTGTAAGTTTGATCAAAAGATAACAACAGAATAG | 1185 | 0.4878 | MDFNHRAIGVTPPTQSLYTAFPPPPPSPATAVYSDRLLRGEFLNMVSMPLTNAVAGDSMRELEKAQIRREMIASGVARRIQLEAEVRRELALEALLGILPMQRGNLSESVQLQPPPPPPPPPPPPRRSLVEERVAMSLNNRFNSTFAPPKSQQLQQLMAPVKIEPCPEETSKKDKVIILDKPNPALHSRKQKAVIPPLDEHRKPKEVWSCALCRVSAPNQGVFSAHVQGRKHKAKEASLRQQNNSKSTDMSASSKRRKFNEFTASIAATISRSNAEADQQVKNLNMVDTARVESKEEEQPEQNRQNIEPLKNKNGTTTTIGDQAERINALKKIHAKFWCETCQVGVWAEAVMEDHLKGKKHLNQMKRLGANHSSSASSNITRSSCKFDQKITTE | 394 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip01g03168 | 394 | MobiDBLite | consensus disorder prediction | 290 | 304 | - | - | |
| Aip01g03168 | 394 | SMART | ZnF_U1_5 | 205 | 239 | IPR003604 | GO:0003676|GO:0008270 | |
| Aip01g03168 | 394 | SMART | ZnF_U1_5 | 334 | 368 | IPR003604 | GO:0003676|GO:0008270 | |
| Aip01g03168 | 394 | Gene3D | Classic Zinc Finger | 326 | 373 | - | - | |
| Aip01g03168 | 394 | Gene3D | Classic Zinc Finger | 199 | 245 | - | - | |
| Aip01g03168 | 394 | PANTHER | OS06G0651300 PROTEIN-RELATED | 1 | 379 | - | - | |
| Aip01g03168 | 394 | PANTHER | OS06G0651300 PROTEIN | 1 | 379 | - | - | |
| Aip01g03168 | 394 | SUPERFAMILY | beta-beta-alpha zinc fingers | 321 | 368 | IPR036236 | - | |
| Aip01g03168 | 394 | MobiDBLite | consensus disorder prediction | 370 | 394 | - | - | |
| Aip01g03168 | 394 | MobiDBLite | consensus disorder prediction | 290 | 318 | - | - | |
| Aip01g03168 | 394 | SUPERFAMILY | beta-beta-alpha zinc fingers | 192 | 243 | IPR036236 | - | |
| Aip01g03168 | 394 | MobiDBLite | consensus disorder prediction | 229 | 256 | - | - | |
| Aip01g03168 | 394 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 114 | 180 | - | - | |
| Aip01g03168 | 394 | Pfam | Zinc-finger of C2H2 type | 337 | 361 | - | - | |
| Aip01g03168 | 394 | Pfam | Zinc-finger of C2H2 type | 208 | 232 | - | - | |
| Aip01g03168 | 394 | MobiDBLite | consensus disorder prediction | 111 | 128 | - | - | |
| Aip01g03168 | 394 | MobiDBLite | consensus disorder prediction | 108 | 128 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip01g03168 | 210 | 366 | C2H2 Transcription Factor Family | AT5G61190 | 26.875 | 3.71e-07 | 50.4 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Aip01g03168 | 01 | 134838118 | 134840282 | Aip01g03168 | 01 | 134838118 | 134840282 | ECH |