Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03162 ATGTTTGACGCTGGTTACAAGTCACAATACATGGGTAGCCAGCAGGACAAACTTTACAGGTTGGAAGTCTTTGATTCTAGACTATCTTCATCTACTGATGCTGGAGTTAAAAATTCTGGATTTAGTATTGATAAATTAAGCAATAGTGGTCATGGAAGCTGCACAACCTCTAGGTCCTTTAAAAGAGGAATGAGAAAGGGATCTGAAGGGCTGAAATCAATTGGCCGATCACTTGGATTTGGGGTATCTAAGGCAGTGTTTCCGGAAGATCTTAAAGTGTCTGAAAAGAAGATATTTGATCCTCAAGACAAATTTTTGCTCTTATGGAATAAACTTTCTCTTATCTCATGCATTTTGGCCGTGTCTGTGGATCCGCTGTTCTTTTATCTTCCTGTCATTGATGATCAAGCACACTGTGTTGGCATAGACCGAAAGTTGGCAGTTATAGCTACAACCTTAAGGACAGTCATTGATGCTTTCTATCTTATACACATGGCACTCCAATTTCGTACTGCATATATTGCTCCATCATCTCGTGTCTTTGGACGGGGTGAGCTGGTCATAGATCCGGCACAGATAGCCAAGCGTTACTTGCAGCGATATTTCATCATTGATTTCCTATCTGTATTTCCCTTACCACAGATTGTGGTTTGGAGATTTCTTCTGAGGTCAAACGGTTCAGATGTACTTCCAACAAAGCAGGCCTTGCTGTTCATTGTCTTGTTTCAGTATGTTCCCAGATTTTTCCGAATGGTTCCATTAACTTCAGAACTTAAAAGAACAGCTGGTGTCTTTGCTGAAACCGCGTGGGCTGGTGCTGCATATTACTTGCTGCTATATATGCTTGCCAGTCATATAGTTGGAGCATTTTGGTACTTGTTAGCAATTGAACGCAACGACTTTTGCTGGCAGAAGGCTTGCCGCAATGATTGCAACAAAAACTTCCTGTATTGTGGCAACCAAAACATGGTAGGTTATGCTGCCTGGAAGAATATAAGTGACAGTACTCTTAAGTTAAAATGTGCTGCAGATGGGGACAATCCACCTTTTGATTATGGAATTTTTAACCAAGCTTTGACATCTGATATTGTTTCATCATCTAAGAATTTCTTCTCCAAATACTGTTACTGTTTATGGTGGGGGCTCCAGAATCTGAGTACACTTGGTCAGGGGCTTCAAACTAGCACCTATCCTGGTGAGGTTATATTTTCTATAGCACTAGCTATTGCTGGACTCATTCTCTTTGCACTTCTGATTGGCAACATGCAGACATATCTTCAGTCTCTTACCATTAGGCTTGAGGAAATGAGGGTGAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGCTTGCTTCCACAAGATCTTAGAGAGCGTGTGAGACGTTATGATCAATATAAGTGGTTGGCAACACGTGGTGTAGATGAAGAAAACTTGGTTCAGAGTCTACCAAAGGATCTGCGAAGGGATATTAAGCGACATCTTTGTCTAGCTTTAGTGAGGAGGGTTCCTCTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAACCATGTTTATTTACAGAGAATACATACATTGTCCGCGAAGGAGATCCAGTTGATGAGATGCTTTTCATCATACGAGGTCGCCTTGAGAGTGTCACTACAGATGGTGGGAGAAGTGGATTTTTCAACCGTGGTTTTCTAAAAGAGGCTGACTTCTGTGGTGAGGAACTCTTGACCTGGGCACTGGATCCCAGATCTGGCTCTAATCTCCCATCTTCTACTAGAACAGTTAAGGCACTGACTGAGGTAGAAGCTTTTGCCTTAACTGCTGATGAGTTAAAGTTTGTAGCCAGTCAGTTTAGGCGCCTTCACAGTAGACAGGTGCAGCACACTTTCCGTTTTTACTCCCAACAATGGAGGACTTGGGCTGCGTGCTTTATTCAAGCAGCGTGGCGCCGATATTCTAAAAAGAAACTTATGAAGCTTCGCCAGAAGGAAGAAGATCCCGATGAGTCAGAAGGAACTCAAAACAATGCTGGTGGCACTTCATACAGCCTCGGTGCTGCCTTGTTAGCCTCAAAATTTGCTGCGCACACTCTTCGAGGCGTACAACGCAATCGAAATGCCAGGACTGCCAGGGAGTTGGTGAAACTACAGAAACCACCAGAACCTGATTTTACAGCAGATGCAGACTAA 2199 0.4293 MFDAGYKSQYMGSQQDKLYRLEVFDSRLSSSTDAGVKNSGFSIDKLSNSGHGSCTTSRSFKRGMRKGSEGLKSIGRSLGFGVSKAVFPEDLKVSEKKIFDPQDKFLLLWNKLSLISCILAVSVDPLFFYLPVIDDQAHCVGIDRKLAVIATTLRTVIDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLQRYFIIDFLSVFPLPQIVVWRFLLRSNGSDVLPTKQALLFIVLFQYVPRFFRMVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAIERNDFCWQKACRNDCNKNFLYCGNQNMVGYAAWKNISDSTLKLKCAADGDNPPFDYGIFNQALTSDIVSSSKNFFSKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAIAGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLATRGVDEENLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPRSGSNLPSSTRTVKALTEVEAFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKKKLMKLRQKEEDPDESEGTQNNAGGTSYSLGAALLASKFAAHTLRGVQRNRNARTARELVKLQKPPEPDFTADAD 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03162 732 SUPERFAMILY Voltage-gated potassium channels 100 427 - -
Aip01g03162 732 Pfam Ion transport protein 108 431 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Aip01g03162 732 MobiDBLite consensus disorder prediction 708 732 - -
Aip01g03162 732 ProSiteProfiles IQ motif profile. 641 670 IPR000048 GO:0005515
Aip01g03162 732 MobiDBLite consensus disorder prediction 707 732 - -
Aip01g03162 732 ProSiteProfiles cAMP/cGMP binding motif profile. 505 589 IPR000595 -
Aip01g03162 732 SMART cnmp_10 505 636 IPR000595 -
Aip01g03162 732 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 15 729 - -
Aip01g03162 732 Gene3D - 117 430 - -
Aip01g03162 732 Gene3D Helix hairpin bin 433 496 - -
Aip01g03162 732 SUPERFAMILY cAMP-binding domain-like 434 625 IPR018490 -
Aip01g03162 732 Gene3D Jelly Rolls 503 623 IPR014710 -
Aip01g03162 732 Pfam Cyclic nucleotide-binding domain 526 616 IPR000595 -
Aip01g03162 732 CDD CAP_ED 505 636 IPR000595 -
Aip01g03162 732 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 15 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03162 Aip-Chr1 134785613 134790555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03162 1 730 Ion Channels AT2G23980 75.201 0.0 1138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03162 K05391 - gmx:100784309 1247.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03162 01 134785613 134790555 Aip01g03162 01 134785613 134790555 ECH