Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03156 ATGGGTTTGGGAGTGATTGGCACTGTTCTAATTTTGGGACTCTTGTTCAAGCATTTGGCTTCTCAGCAACCAAACACTGATGAGTTCTATGTGTCTGAGTTCTTGAAGAAAATGGTTTCCAATTCTTCTTCTTTTTCCTCCTACAATTTCTCAGCTTCAGTGTGTTCATGGCAAGGAGTTTTCTGTGACAACAACAAAGAACATGTTGTTGAGTTAAACTTTTCAGGTTTAGGCCTCTCTGGAACTATTCCTGATAACACCATAGGCAAGCTGAGCAAGCTTCAAACTTTGGATCTTAGCTGCAACAAGATCACAACTTTGCCTTCAGATTTTTGGAGTTTAAGCTCTATCAAGAGCCTCAACCTCTCCACCAATCAGATTTCAGGTTCATTGACCAACAACATTGGCAATTTTGGTATGCTTGAAACCATTGACTTGTCAAGCAACAACTTCACTGAAGAAATTCCAGAAGCTATTGGATCCCTTATGAGTTTGAGAATCCTCAAACTTGACCATAACAAATTCTCAAGAAGCATTCCTTCTGGGATTCTCAAGTGCCAGTCCCTGGTTTCAATTGATCTCTCATCAAATCAATTGAATGGAACACTTCCAAATGGTTTTGGTGCTGCTTTTCCCAAGCTCAAGAACTTGAACCTTGCTGCCAATGATATAGATGGCCGAATCTTGGATATTTCAGGTTTCAATTCCATTTTAAGTCTCAACATATCTGGAAATTCCTTTCAGGGTTCTATCATGGGTGTGTTTCAGGAAAAGTTGGAGGTATTGGACCTAAGCAGAAACCAATTTCAAGGCCACATTTCACAGAACTTGTTGAGTTTGAGTGAGTCCTTGTTGAATCTAAAGCACCTCAATCTTGCACACAACAGATTTTCCAAACAGAAATTCCCAACAAAGATTGAAAAGCTCCAAGGATTGGAGTATCTGAACTTGTCCAAAACCAATCTTGTAGGCCTAATCCCTGATGAAATCTCAAAACTGAGTAATCTCAATGTTCTTGATCTGTCTATGAATCATCTTGCTGGTAAAGTTCCAATTTTGAGGAACAAACACCTCCAAATTCTTGACCTTTCAAACAACACCTTGAGTGGAACAATCCCTTTGTCTGTCTTGGGGAAACTACCATTCATGGAGAGATACAACTTCTCTTACAATAACTTAACACTGTGTGCTTCAGACATTCACCCTGATGTTCTTGAATCAGCATTCTTTGGATCAGTGAACAGTTGTCCAATTGCTGCAGACCCACATTTCTTCAGGAGAAAGAACAATGGACACAACAAGGGAATGAAGCTAGCATTGGTGTTAACCTTCTCAATGATCTTCATGCTTGCTGGCCTGTTGTTCTTAGCATTCGGCTGCCGAAGGAAGTCGAAAATGTGGCAAGTTAAACAAACTTCATACAAAGAAGAACAGAACATTTCCGGGCCTTTCTCATTCCAGACTGATTCAACAACCTGGGTGGCTGATGTTAAGCAGGCAACATCAGTTCCGGTGGTAATCTTTGAGAAGCCTTTGTTGAACATTACATTTGCAGACTTACTGGCTGCAACTTCAAATTTCGACCGAGGTACTCTTTTGGCCGAAGGAAAATTCGGTCCGGTCTATAGAGGCTTTCTTCCTGGTGGTATTCATGTGGCAGTTAAAGTTTTGGTGGTTGGTTCTACATTGACAGATCAAGAAGTGGCTAGAGAGCTTGAGTTTCTTGGCAGAATCAAGCATCCCAACCTTGTTCCTTTAACTGGATATTGTGTAGCAGGGGATCAAAGGATTGCTATATATGATTATATGGAGAATGGAAACTTGCAAAATCTGCTATATGACTTGCCACTTGGTGTGCAAAGCACTGATGATTGGAGCACAGATACATGGGATGAATCTGACAACAATGGAATTCAGAATGCTGGCTCTGAAGGATTGCTCACAACTTGGAGATTTCGTCACAAAATCGCCCTTGGAACCGCTCGAGCTCTCGCTTTCTTGCACCATGGATGCTCTCCTCCAATCATTCATAGAGCAGTCAAGGCCAGCAGTGTTTATTTGGACTTTGACCTCGAGCCCAGGCTGTCTGATTTCGGCCTGGCTAAGATCTTTGGAAGCGGCTTGGACGAGGAGATTGCTCTTGGTTCCTCTGGTTATGTTCCGCCGGAGTTTTCTCAACAAGAATTCGAGTCACCAACCACGAAATCTGATGTATATTGTTACGGAGTTGTGCTCTTTGAGCTAGTAACCGGAAAGAAGCCGGTCGGAGATGATTACCCTGATGACAAGGAATCAACTTTGGTTAGCTGGGTGAGAGGACTAGTTAGAAAGAATCAAGCTTCAATAGCAATTGATCCAAAGATTAGGGACACAGGACTAGATGAACAAATGGAGGAGGCTCTCAAGATTGGTTATCTTTGCACTGCTGACTTGCCGGCCAAGCGACCAACAATGCAGCAGATTGTTGGACTTCTAAAAGACATTGAACCTATTGCTTCTAATTAG 2505 0.4204 MGLGVIGTVLILGLLFKHLASQQPNTDEFYVSEFLKKMVSNSSSFSSYNFSASVCSWQGVFCDNNKEHVVELNFSGLGLSGTIPDNTIGKLSKLQTLDLSCNKITTLPSDFWSLSSIKSLNLSTNQISGSLTNNIGNFGMLETIDLSSNNFTEEIPEAIGSLMSLRILKLDHNKFSRSIPSGILKCQSLVSIDLSSNQLNGTLPNGFGAAFPKLKNLNLAANDIDGRILDISGFNSILSLNISGNSFQGSIMGVFQEKLEVLDLSRNQFQGHISQNLLSLSESLLNLKHLNLAHNRFSKQKFPTKIEKLQGLEYLNLSKTNLVGLIPDEISKLSNLNVLDLSMNHLAGKVPILRNKHLQILDLSNNTLSGTIPLSVLGKLPFMERYNFSYNNLTLCASDIHPDVLESAFFGSVNSCPIAADPHFFRRKNNGHNKGMKLALVLTFSMIFMLAGLLFLAFGCRRKSKMWQVKQTSYKEEQNISGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDQEVARELEFLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVQSTDDWSTDTWDESDNNGIQNAGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPIIHRAVKASSVYLDFDLEPRLSDFGLAKIFGSGLDEEIALGSSGYVPPEFSQQEFESPTTKSDVYCYGVVLFELVTGKKPVGDDYPDDKESTLVSWVRGLVRKNQASIAIDPKIRDTGLDEQMEEALKIGYLCTADLPAKRPTMQQIVGLLKDIEPIASN 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03156 834 SUPERFAMILY Protein kinase-like (PK-like) 504 825 IPR011009 -
Aip01g03156 834 ProSiteProfiles Leucine-rich repeat profile. 357 378 IPR001611 GO:0005515
Aip01g03156 834 Gene3D Phosphorylase Kinase; domain 1 487 602 - -
Aip01g03156 834 Gene3D Ribonuclease Inhibitor 303 354 IPR032675 -
Aip01g03156 834 Gene3D Ribonuclease Inhibitor 30 135 IPR032675 -
Aip01g03156 834 Gene3D Ribonuclease Inhibitor 355 401 IPR032675 -
Aip01g03156 834 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 277 - -
Aip01g03156 834 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 284 830 - -
Aip01g03156 834 Pfam Leucine Rich repeat 355 370 IPR001611 GO:0005515
Aip01g03156 834 Gene3D Transferase(Phosphotransferase) domain 1 603 833 - -
Aip01g03156 834 SMART LRR_typ_2 257 280 IPR003591 -
Aip01g03156 834 SMART LRR_typ_2 333 355 IPR003591 -
Aip01g03156 834 SMART LRR_typ_2 162 186 IPR003591 -
Aip01g03156 834 SMART LRR_typ_2 91 113 IPR003591 -
Aip01g03156 834 SMART LRR_typ_2 284 309 IPR003591 -
Aip01g03156 834 SMART LRR_typ_2 114 138 IPR003591 -
Aip01g03156 834 ProSiteProfiles Protein kinase domain profile. 527 832 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g03156 834 Gene3D Ribonuclease Inhibitor 211 302 IPR032675 -
Aip01g03156 834 SUPERFAMILY L domain-like 49 398 - -
Aip01g03156 834 PRINTS Leucine-rich repeat signature 189 202 - -
Aip01g03156 834 PRINTS Leucine-rich repeat signature 333 346 - -
Aip01g03156 834 Pfam Protein tyrosine and serine/threonine kinase 531 823 IPR001245 GO:0004672|GO:0006468
Aip01g03156 834 Pfam Leucine rich repeat 82 127 IPR001611 GO:0005515
Aip01g03156 834 Pfam Leucine rich repeat 286 346 IPR001611 GO:0005515
Aip01g03156 834 PANTHER CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED 1 277 - -
Aip01g03156 834 PANTHER CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED 284 830 - -
Aip01g03156 834 ProSiteProfiles Leucine-rich repeat profile. 93 114 IPR001611 GO:0005515
Aip01g03156 834 Gene3D Ribonuclease Inhibitor 136 210 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03156 Aip-Chr1 134728233 134731688 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03156 64 829 Receptor kinase-like Gene Family AT4G39400 35.234 6.59e-117 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Aip01g03156 PK_Tyr_Ser-Thr 5.5e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03156 - - adu:107459185 1576.22