Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03146 ATGCAACCTTGTAGCAGAGAAATGCAAAGCCTCAACTCCCTCTTCAACAATCAGCAGCAGATCCAAATGGACCCTGCTACTTCTCAAGAAGACGATTTCATCAAGCAGATGCTTTCTACTATCCCTCCTCCACCACCTCCTTCATGGAACCTTGACCATACTCCTCCTAACCCTAAGCCTTACTGGCTTGACAACGACAATGTCGCTTTCCCTAACTACGACGATCCTTCCACTCTCGCTTCCAAGTTCCGTAACCACCAGATCACCGCTAATTCCTCCTCCAAGGCCGCCGCCGCCGCTCTCTTGCTCCAACAGCAGCTTCTCATGACCAGAGGCCTCTCCGGTGCTGATTCCGCCATCCTTCATCACATGTTTGACTCTTCCCAAAACGACGTCGTCGACGCCTCCTCCTCCTCCTTCAAATCTCCCAATCCAACCTCTGCCGACGGTTCCGTTCAAGCTCTGTACGACGGTTTCACCGGATCTCTCCAGGGCGCTGCTCTAGCATCCAATCAGACTCACCATTTTCAGCATCCACAGGTTCAGACAAGTTCAAATCCGAATCAGATGCAGGGGCAGGGGCAGGGAACGAGCCAAGGTGGGAACCCGAACCCGAACCCGAACCCGGGTCAGCCGAAACAGAGGGTTAGGGCGAGGAGAGGTCAAGCCACGGACCCACACAGCATCGCTGAGAGGTTGCGAAGGGAAAGGATCGCGGAGAGAATGAAGGCCTTGCAGGAATTGGTTCCCAACGCCAACAAGACAGACAAGGCCTCCATGCTAGATGAGATCATCGACTATGTGAAATTCCTACAGCTCCAAGTCAAGGTTCTTAGCATGAGCAGATTGGGAGGTGCAGCTGCTGTTGCTCCGCTTGTTGCTGATATAAACTCTGAGGGAGGCGGTGACTGCGTCCAAACCAACGGCAACCAAACGGCAGGGGCTTCATCCTCCAACGACAGCCTCACCATGACGGAGCAACAGGTGGCTAAGCTCATGGAGGAGGACATGGGTTCCGCCATGCAGTACCTCCAGGGTAAGGGCCTCTGCCTCATGCCAATCTCCCTAGCCACCGCCATCTCCACCGCCACTGCCACGTGTCACCCCAGGAACCCCATCATGAACCCCACTGATGGACCCTCCTCTCCCGGCATGTCTGTCCTCACGGTGCAGTCTGCTAACGGCGACGCCGTCAAGGACGCCACCTCCGTTTCCAAGCCCTAA 1224 0.5539 MQPCSREMQSLNSLFNNQQQIQMDPATSQEDDFIKQMLSTIPPPPPPSWNLDHTPPNPKPYWLDNDNVAFPNYDDPSTLASKFRNHQITANSSSKAAAAALLLQQQLLMTRGLSGADSAILHHMFDSSQNDVVDASSSSFKSPNPTSADGSVQALYDGFTGSLQGAALASNQTHHFQHPQVQTSSNPNQMQGQGQGTSQGGNPNPNPNPGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADINSEGGGDCVQTNGNQTAGASSSNDSLTMTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATATCHPRNPIMNPTDGPSSPGMSVLTVQSANGDAVKDATSVSKP 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03146 407 PANTHER TRANSCRIPTION FACTOR BHLH69 25 373 - -
Aip01g03146 407 MobiDBLite consensus disorder prediction 133 153 - -
Aip01g03146 407 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 220 282 IPR036638 GO:0046983
Aip01g03146 407 SMART finulus 228 277 IPR011598 GO:0046983
Aip01g03146 407 Pfam Helix-loop-helix DNA-binding domain 227 272 IPR011598 GO:0046983
Aip01g03146 407 MobiDBLite consensus disorder prediction 173 233 - -
Aip01g03146 407 MobiDBLite consensus disorder prediction 218 233 - -
Aip01g03146 407 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 222 271 IPR011598 GO:0046983
Aip01g03146 407 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 373 - -
Aip01g03146 407 MobiDBLite consensus disorder prediction 173 204 - -
Aip01g03146 407 Gene3D - 217 279 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03146 Aip-Chr1 134584679 134588301 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03146 209 406 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 66.368 1.80e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip01g03146 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03146 - - jre:109000831 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03146 01 134584679 134588301 Aip01g03146 01 134584679 134588301 ECH