Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03120 ATGTCAGGTTGGGACGAAGGAGCCGTCTACTACAGCGACCAAGCCCACTCATGGCACGACGGCAACCACCCCGGCGACCCCGACGCCACCGCATCGAACCACACCATCCAACAGAAATTCAAGGAGTTCATTCGCAACTTCAGTAAGAACGGTCTCTTCCCTTACAGACAAAACCTCCTCGACAACCCTAAGTTCCTCCTTGTCAGATTTGAAGACCTCGACGAATTTGCTCCCGAACTCTCCCCTAAGCTCGAGTCTTCCCCCGCCGACTTCTTGCCCTTGTTCGAAAGCGCCGCGGCGCAGGTTTTGGGGAGTTTGAAGACTAAAGTCACTGGCGACACCGGAGAGCTGGAAGATCAGGTTGCCGGCGATGTCCAGATTCTGCTTACTTCCGACAAGGATCCTGTATCCATGAGGTCGCTCGGGGCCCAAAACATATCGAAGCTTGTTAAAATTGCTGGGATTACTATAGCTGCATCAAGGACTAAGGCAAAGGCAACTTATGTTACCTTAGTATGTAAGAACTGCAAGAAAGGGAAGCAAATTCCGTGCAGGCCAGGACTTGGGGGAGCAGTTGTTCCTCGATCATGTGATCATATTCCTCAGGCTGGAGAAGAACCATGCCCAATTGACCCATGGCTTGTGGTTCCTGACCAGAGCCAGTATGTTGATCAACAAACATTGAAACTGCAAGAAAACCCAGAGGATGTTCCAACCGGTGAGCTACCTAGAAACCTGCTCCTCTCTGTTGATCGTCATCTAGTTCAAACAGTGGTACCTGGCTCAAGATTGACAGTCACTGGAATCTTCAGTATTTTCCAAGCTTCCAACGCTGCATCTAACAAAGGAGCAGTGGCAGTTAGACAACCATATATTAGGGTTGTAGGAATGGAAGACACAAATGAAGCCAAGTCTGGTGGTCCTTCTGCGTTTACACCAGAAGAGATAGAAGAATTCAAAAAGTTTGCAGCTGAACCTGATGCATATAAAAATATATGCTCCAAGATTGCTCCCTCAATATTTGGGCATGATGACGTCAAGAAGGCTGTGGCCTGTCTTCTTTTTGGTGGGTCAAGAAAGAACTTGCCAGATGGAGTGAAGTTAAGAGGTGATATCAATGTGTTGCTTCTTGGGGATCCATCTACAGCAAAATCACAGTTTCTGAAGTTTGTTGAAAAGACAGCTCCTATTGCTGTCTATACTTCCGGGAAAGGCTCATCAGCTGCTGGTCTCACAGCTTCTGTAATCAGAGATACCAGCACTCGTGAGTTTTACCTTGAAGGAGGGGCTATGGTCTTGGCAGATGGAGGCGTTGTCTGCATTGATGAATTCGACAAGATGAGACCAGAAGATAGGGTCGCCATCCATGAAGCCATGGAACAACAAACTATATCTATAGCTAAAGCAGGAATAACTACAGTTCTTAATTCTAGGACTTCTGTTCTTGCTGCTGCTAATCCTCCATCTGGACGATATGATGATCTTAAGACTGCACAGGATAACATTGATTTGCAGACAACCATTCTTTCTAGATTTGATTTAATCTTTATTGTGAAAGACATCAGAATGTACAGTCAAGACAAGATCATAGCTAGTCATGTCATAAAGGTCCATGCATCAGCTGATGCAACCGCTAGTGAGAACAGGGTTTCTAAAGAAGAGAATTGGCTGAAGAGGTATTTACACTATTGTCGGACTGAATGCCACCCTCGTCTATCAGAATCTGCTGCAACATTACTGCAGAACAATTATGTGAAAATCAGGCAGGATATGAGGCAGCAAACCAACGAAACTGGAGAAGCTTCTGCAGTACCAATTACAGTAAGATCTCATGTTGCTACTGAGGAGCATGTGCAAGAAGCAATAAGGCTTTTCACCGTGGCTACAATGGATGCTGCTAGGTCTGGAATACACCAACAAATCAGTCTCACACCAGAAATGGCAAATGAAATAAAGCAAGCAGAAACTCAGATAAAGAGAAGAATTGGGATTGGAAACCACATATCAGAAAGAAGGCTTATTGATGACCTCAGCAGAATGGGAATGAACGAATCCATTGTGAGAAGAGCTCTTGTGATCATGCACCAGAGAGACGAAGTAGAGTACAAGCGAGAAAGGCGCGTTATATATAGGAAAGCATGA 2142 0.4547 MSGWDEGAVYYSDQAHSWHDGNHPGDPDATASNHTIQQKFKEFIRNFSKNGLFPYRQNLLDNPKFLLVRFEDLDEFAPELSPKLESSPADFLPLFESAAAQVLGSLKTKVTGDTGELEDQVAGDVQILLTSDKDPVSMRSLGAQNISKLVKIAGITIAASRTKAKATYVTLVCKNCKKGKQIPCRPGLGGAVVPRSCDHIPQAGEEPCPIDPWLVVPDQSQYVDQQTLKLQENPEDVPTGELPRNLLLSVDRHLVQTVVPGSRLTVTGIFSIFQASNAASNKGAVAVRQPYIRVVGMEDTNEAKSGGPSAFTPEEIEEFKKFAAEPDAYKNICSKIAPSIFGHDDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDTSTREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIASHVIKVHASADATASENRVSKEENWLKRYLHYCRTECHPRLSESAATLLQNNYVKIRQDMRQQTNETGEASAVPITVRSHVATEEHVQEAIRLFTVATMDAARSGIHQQISLTPEMANEIKQAETQIKRRIGIGNHISERRLIDDLSRMGMNESIVRRALVIMHQRDEVEYKRERRVIYRKA 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03120 713 Pfam MCM P-loop domain 316 538 IPR001208 GO:0003677|GO:0005524|GO:0032508
Aip01g03120 713 Gene3D - 165 223 - -
Aip01g03120 713 PRINTS Mini-chromosome maintenance (MCM) protein family signature 508 516 IPR001208 GO:0003677|GO:0005524|GO:0032508
Aip01g03120 713 PRINTS Mini-chromosome maintenance (MCM) protein family signature 481 493 IPR001208 GO:0003677|GO:0005524|GO:0032508
Aip01g03120 713 PRINTS Mini-chromosome maintenance (MCM) protein family signature 429 443 IPR001208 GO:0003677|GO:0005524|GO:0032508
Aip01g03120 713 PRINTS Mini-chromosome maintenance (MCM) protein family signature 369 384 IPR001208 GO:0003677|GO:0005524|GO:0032508
Aip01g03120 713 PRINTS Mini-chromosome maintenance (MCM) protein family signature 457 470 IPR001208 GO:0003677|GO:0005524|GO:0032508
Aip01g03120 713 Pfam MCM AAA-lid domain 556 610 IPR041562 -
Aip01g03120 713 Coils Coil 577 597 - -
Aip01g03120 713 Gene3D - 138 273 IPR012340 -
Aip01g03120 713 Pfam MCM OB domain 138 273 IPR033762 -
Aip01g03120 713 SMART mcm 134 630 IPR031327 GO:0003677|GO:0005524|GO:0032508
Aip01g03120 713 CDD MCM5 331 627 - -
Aip01g03120 713 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 59 659 IPR031327 GO:0003677|GO:0005524|GO:0032508
Aip01g03120 713 SUPERFAMILY Nucleic acid-binding proteins 39 294 IPR012340 -
Aip01g03120 713 Gene3D - 309 648 IPR027417 -
Aip01g03120 713 PANTHER DNA REPLICATION LICENSING FACTOR MCM5 59 659 - -
Aip01g03120 713 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 139 154 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Aip01g03120 713 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 564 579 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Aip01g03120 713 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 288 300 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Aip01g03120 713 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 165 177 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Aip01g03120 713 Pfam MCM N-terminal domain 37 118 IPR027925 -
Aip01g03120 713 ProSiteProfiles MCM family domain profile. 328 534 IPR001208 GO:0003677|GO:0005524|GO:0032508
Aip01g03120 713 ProSitePatterns MCM family signature. 437 445 IPR018525 GO:0003677|GO:0005524|GO:0006260
Aip01g03120 713 Gene3D - 31 121 - -
Aip01g03120 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 626 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03120 Aip-Chr1 134384039 134391145 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03120 1 713 Core DNA Replication Machinery Family AT2G07690 74.317 0.0 1107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03120 K02209 - gmx:100779483 1199.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03120 01 134384039 134391145 Aip01g03120 01 134384039 134391145 ECH