Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03119 ATGCCGGACGGAGAATCCTCTTCCGCCACGTCATCGGCGGAGCTGGAGCCCCATTTAAGCGTCGCTGAATACTTGCTGCAGAACCTTAGTCTCTCTGAAGTCAAAGATCATGACGACCAAGCTGTTAAGAAAGACCCCAAAAAAATTGCCAGAAGGTACCAGTTGGAGCTGTGCAAAAAAGCATTAGAAGAAAATATAATTGTATATTTGGGGACAGGTTGTGGGAAGACCCACATTGCTGTGCTGCTTATGCATGCGATGGGTCATTTGATAAGGAAGCCCCAGAAAAATATATGTATTTTTCTTGCCCCTACTGTGGCGCTTGTTCATCAGCAAGGGAAGGTTATAGAAGACTCTACTGATTTTAAGGTTGGGATTTTCTGTGGGAGCTCCAAGCGCTTGAAACGTCATCATGATTGGGAGCAGGAAATTGGACAGCATGAGGTTCTTGTCATGACCCCGCAGATATTATTGCACAACTTATCTCATTGTTTCATTAGGATGGACATGATTTCACTTTTGATATTTGATGAATGTCATCATGCTCAAGTCAAAAGCAACCATCCTTATGCAGAAATCATGAAAGTCTTCTACAAAAATAATTCCAAAAGTGTTCCCCGTATTTTTGGCATGACTGCTTCCCCAGTCGTAGGAAAAGGGGCTTCCAGTGAAGCAAATCTATCAAAAAGCATCAATAGTCTTGAACAAATACTTGATGCTAAGGTATACACAGTTGAAGACAGGGAATTGCAATCTTTTGTGACCAATGCAACAATTTCTGTATATCATTATAGCTCAGTTGCAAATGGAACAGATAGCTTGTATACAACTTACCATGCAGATCTTGATCTGATCAAATATCAGTGCATAGCAAGCCTCGGTAGGAATGTAGAAGATCACCAGAAACGGATGAACACAAAAAAACTTCTAAACAGGATACATGAGAATGTTGTTTTCTGTCTGAGGAATCTTGGCATTTGGGGAGGACTGCAAGCTAGTCATATTCTTTTGAGGGGCGATCGTTCCGAGAGGCATGAATTAGTGGAGGCAGAAGGAAATTCAAGTGATGACTCTGTGTGTGATAAATATCTATCTCAGGCAGCTGAACTCTTTAACTCACATCTGAAAGGTGACGGTGTATCTGATTTATCTTCTATGGAAATAATGAGAGAGCCCTTTTTCTCATCAAAACTTTTGTGCCTCGTTCAGATACTGTCCTCCTTTAGGATGCAACAGAACCCAAAATGTATCATTTTTGTTAATAGAATCGTGACTGCAAGATCCCTGTCATACATACTTAAGAAGCTGAAACTTCTAACACAATGGAGGAGTGATTTTCTAGTAGGAGTCCATGCTGGATTGAAGAGTATGTCACGCAAGACCATGAACATCATTGTTGAGAAGTTTCGCTCTGGTGAGTTGAATCTATTGGTTGCAACAAAAGTGGGTGAAGAAGGACTTGACATTCAAACTTGCTGCCTTGTGATACGGTTTGATCTTCCTGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCACGTATGCCTCAGTCAGAATATGCATTTTTGGTGGACAGTGACAATAAGAAGGATCTCGATTTAATTGATGGTTTTGAGAAAGATGAATGCCGCATGAATATGGAAATTGCTGACCGTACATCAACTGAGACATACATAATCCCTGAGGAAAGAATATTCAGAGTAGATTCATCCGGTGCTTCTGTCAGTTCTGGATATAGTATTTCATTACTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTACTTTGACCCCAAGCCAAGCTTTTATTACTTTGATGAAAAAGATGGGATAGTCTGCCACATAATATTTCCATCCAATGCACCAATACACTTAATTGTCAGTTCACCACAGTTGTCTATGGAAGCTTCCAAAAAGGATGCTTGCCTGAAAGCAATTCAAGAACTGTATGAAATAGGTTCATTAAGTGATTGTCTTTTGCCAAAGCAAGAGACCACAGAGCCAGAGGAGAAGGATTCAAGCCCATCTAATACAGATGGTTGTGAAGAGGACAATTCAAGAGGAGAATTACATCAGATGTTAGTTCCTTCTCCCTTTAGAAAGTCTTGGATAAATGAAGAGAAAATTGTTCATCTCAACTCATACTACATAAAATTTTGCCCCTCTCCAGAGGATAGGGTTTACAAAAAGTTTGGTCTATTCATCATGACATGTCTTCCAGCAGAGGCTGAGAAACTGGAACTTGATCTTCATCTTGCTCATGGTAGATCTGTTATGACATCATTTGTTCCATTTGGAGTTGTAGAATTCGACAAAGATGAGATTAAGATGGCTGAACGTTTTCAAGAGATGTTCCTTAAAATTATTCTTGACCGATCAGAATTTGTTTCTGATCTTGTAACCCTGGGTAAAGGTGCTGAATCTCACAATGGTTCATCAACCTTCTACCTTATGCTTCCAGTTGTATTGCAAGAATATGAAAATATCATGACTGTGGATTGGAAGACTGTGAGAAGATGCCTTTGTTCACCAATTTTCAAGCCTCCACCAGATGCTGTGTACCAAAAGCCTTATCCTTCTGATTCATCACTTCAACTTGCCAATGGTAAAAGAAGCATAAGAGATGTTGAAAATAGTTTGGTATATGCCAAACACAAAAAGCTCTTCTATTTTGTCACAAACGTGAACCGTGAAAAGAATGGATTAAGTCCCAGTAAAGATTCAGGCACTTCAAGCTATGCAGATGACTTACTTGAAAAGTTTAGTATTCATCTCAAACACCCTGAACAGCGACTTCTGCATGCAAAACCAGTTTTCAATCTGCACAACCTGCTGCATAATCGGAAGTATGAGGATACAGAGCCACAGGAGCTGGAGGAGTTCTTTGTTGATTTGCCTCCTGAGCTTTGCGAATTGAAAGTTGTGGGTTTTTCGAAGGATATGGGTAGTTCCATATCTTTGCTACCCTCAGTTATGCATCGTCTTGGAAACTTACTGGTTGCTATTGAACTCAAGCAAATGCTGTCTCGATTCTTCCCAGAGGCAGCTGAAATTAATTCCCATACAATTCTTGAAGCTCTCACAACTGAGAAGTGTCAGGAACGGTTTTCGCTTGAAAGACTAGAAGTGCTTGGAGATGCTTTTCTCAAATTTGCTGTTGCACGCCATTTTTTTCTCACATGTGACAGTCTTCATGAAGGAGACCTTACTGCAAGGCGTTCTAATGTTGTAAATAATTCCAATTTGTATAAATTGGCTCTTAAACGCAATTTGCAGGTCTATATACGTGATCAGGCGTTTGATCCCTGTCAATTCTACGCATTTGGCCGTCCTTGCCCAATAGTTTGCAACAATGAAACAGAAGAAAGTATACACTCATGTTTAAATTCTGTTAAGGAGCAAGGAAGCTCAACTGAAATCCAGTGCAATAAAAATCACCACTGGGTATATAGAAAAACAATTGCTGATGCAGTTGAAGCTTTGGTCGGAGCATTTATAGTTGACAGTGGCTTTAAAGCTGCAATTGCATTTCTTACGTGGCTTGGCATACAAGTTAGTTTTGAAGCCTCACAATTGATTAATGTTTGCCGAGGAAGTGTTGGCTATGTTCCTCTCTCTGCTGATGTAAACATTCTTTCCCTCGAAGATAAGTTGGGATATCACTTCATTCATAAGGGTCTGCTTCTTCAGGCTTTTGTGCATCCTTCTTACAATAAGCATGGAGGAGGTTGCTACCAGCGACTGGAGTTTCTTGGTGATGCTGTGCTGGATTTTTTGATTACTTCATACCTGTACTCAGCTTATCCCAAGCTAAAGCCTGGTCAATTGACGGATTTGAGATCGTTGTCTGTTAACAATAAGGCATTTGCCTGTGTTGCTGTGGATCGCAGTTTTGATAAATTTCTTTTATGTGATTCTAGCAACCTTTCTGAGGCAGTAAAAAAGTATGTGGCCTATATTAGAAGACCTTCATCAAGTAATGTCAATGAAGGGCCGAAATGTCCAAAGGCTTTGGGTGACTTGGTGGAATCTTGTGTTGGTGCTATTCTTCTTGATTCAGGGTTCAATTTGTACAAAGTTTGGGAAATAATGACTTCATTCTTGGATCCAATCATGAAATTCTCATCTAACCTGCAGCTTAGTCCCAAGAGGGATCTGCAAGAACTATGCCAATCTCATAATTTGGAGTTGCAACTCCAAGCATCAAAGTTGACTAAAATGTTTTCAGTTGAAGCAAAAGTGATTGTGAATGGTACATGTCAAACAGCAGTGGCAACCGGGCAAAGTAAAAAAGAGGCTACTAGAATTGCTTCACAGAAACTATTTTCAGAGCTAAAGGCTCAAGGCTGGAGACCAAGGTCAAAACCTTTGGAAGAAGTTTTAAAATCTACCTTTAAGGGGGAAGCAAAACTTATTGGCTATAATGAAACTCCCATTGATGTAACAGCAATTAATTCCATTGAGCACTCGACGGTTAATGGGAACTTAAGTAGCAGCAACTCAAACCCGATAATTCGCCCCCTCCGTGAGGTGATTGGTATAAAACCTGTTGACCAAAAGGTTCAACATTCTTCTAAGGGACAGCGTAGTGGAACTTATGATAATCGTGATTGTGCCGGTGATTTATCAAGGACAGGAACTGCAAGGTCACGATTGTATGAATTCTGTGCTGCTTCTTGCTGGAAACCACCGACATTTGAGTGCGTCTATGAAGGGGGACCAGATCACATGAAGTTATTCACATACAAGGTGACCTTGGACATAGAAGAATCCCCAGATGTGATTTATGAATTCATTGGGGAACCAAAACCGAAGAAGAAAGACGCAGCAGAGTCCACGGCTGAGGGTGTGTTTTGGTACCTGGAACGCGCAGGTCATTCCAAAATCCTGAATGAGACACGGCCTACTCTGTTGTTGGTCAGAAAGGAACTTATGAGTGAGGGTGTGTTTTGGTACCTGGAACGCGCAGGTTACCTGCCTAATAAGCGTAACTGA 5001 0.4075 MPDGESSSATSSAELEPHLSVAEYLLQNLSLSEVKDHDDQAVKKDPKKIARRYQLELCKKALEENIIVYLGTGCGKTHIAVLLMHAMGHLIRKPQKNICIFLAPTVALVHQQGKVIEDSTDFKVGIFCGSSKRLKRHHDWEQEIGQHEVLVMTPQILLHNLSHCFIRMDMISLLIFDECHHAQVKSNHPYAEIMKVFYKNNSKSVPRIFGMTASPVVGKGASSEANLSKSINSLEQILDAKVYTVEDRELQSFVTNATISVYHYSSVANGTDSLYTTYHADLDLIKYQCIASLGRNVEDHQKRMNTKKLLNRIHENVVFCLRNLGIWGGLQASHILLRGDRSERHELVEAEGNSSDDSVCDKYLSQAAELFNSHLKGDGVSDLSSMEIMREPFFSSKLLCLVQILSSFRMQQNPKCIIFVNRIVTARSLSYILKKLKLLTQWRSDFLVGVHAGLKSMSRKTMNIIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSDNKKDLDLIDGFEKDECRMNMEIADRTSTETYIIPEERIFRVDSSGASVSSGYSISLLHQYCSKLPHDEYFDPKPSFYYFDEKDGIVCHIIFPSNAPIHLIVSSPQLSMEASKKDACLKAIQELYEIGSLSDCLLPKQETTEPEEKDSSPSNTDGCEEDNSRGELHQMLVPSPFRKSWINEEKIVHLNSYYIKFCPSPEDRVYKKFGLFIMTCLPAEAEKLELDLHLAHGRSVMTSFVPFGVVEFDKDEIKMAERFQEMFLKIILDRSEFVSDLVTLGKGAESHNGSSTFYLMLPVVLQEYENIMTVDWKTVRRCLCSPIFKPPPDAVYQKPYPSDSSLQLANGKRSIRDVENSLVYAKHKKLFYFVTNVNREKNGLSPSKDSGTSSYADDLLEKFSIHLKHPEQRLLHAKPVFNLHNLLHNRKYEDTEPQELEEFFVDLPPELCELKVVGFSKDMGSSISLLPSVMHRLGNLLVAIELKQMLSRFFPEAAEINSHTILEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLTCDSLHEGDLTARRSNVVNNSNLYKLALKRNLQVYIRDQAFDPCQFYAFGRPCPIVCNNETEESIHSCLNSVKEQGSSTEIQCNKNHHWVYRKTIADAVEALVGAFIVDSGFKAAIAFLTWLGIQVSFEASQLINVCRGSVGYVPLSADVNILSLEDKLGYHFIHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDFLITSYLYSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRSFDKFLLCDSSNLSEAVKKYVAYIRRPSSSNVNEGPKCPKALGDLVESCVGAILLDSGFNLYKVWEIMTSFLDPIMKFSSNLQLSPKRDLQELCQSHNLELQLQASKLTKMFSVEAKVIVNGTCQTAVATGQSKKEATRIASQKLFSELKAQGWRPRSKPLEEVLKSTFKGEAKLIGYNETPIDVTAINSIEHSTVNGNLSSSNSNPIIRPLREVIGIKPVDQKVQHSSKGQRSGTYDNRDCAGDLSRTGTARSRLYEFCAASCWKPPTFECVYEGGPDHMKLFTYKVTLDIEESPDVIYEFIGEPKPKKKDAAESTAEGVFWYLERAGHSKILNETRPTLLLVRKELMSEGVFWYLERAGYLPNKRN 1666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03119 1666 CDD DSRM_DCL_plant 1556 1625 - -
Aip01g03119 1666 Gene3D Ribonuclease III domain 1018 1183 IPR036389 GO:0004525|GO:0006396
Aip01g03119 1666 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 581 671 IPR005034 GO:0016891
Aip01g03119 1666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 530 IPR027417 -
Aip01g03119 1666 Gene3D Dicer dimerisation domain 577 674 IPR038248 -
Aip01g03119 1666 PANTHER DICER-LIKE PROTEIN 4 46 1626 - -
Aip01g03119 1666 MobiDBLite consensus disorder prediction 665 689 - -
Aip01g03119 1666 SMART PAZ_2_a_3 853 1002 IPR003100 GO:0005515
Aip01g03119 1666 SMART riboneu5 1023 1193 IPR000999 GO:0004525|GO:0006396
Aip01g03119 1666 SMART riboneu5 1228 1379 IPR000999 GO:0004525|GO:0006396
Aip01g03119 1666 MobiDBLite consensus disorder prediction 1521 1542 - -
Aip01g03119 1666 ProSiteProfiles PAZ domain profile. 876 976 IPR003100 GO:0005515
Aip01g03119 1666 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 400 554 IPR001650 -
Aip01g03119 1666 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1383 1449 IPR014720 -
Aip01g03119 1666 ProSitePatterns Ribonuclease III family signature. 1248 1256 IPR000999 GO:0004525|GO:0006396
Aip01g03119 1666 Pfam Ribonuclease III domain 1248 1356 IPR000999 GO:0004525|GO:0006396
Aip01g03119 1666 Pfam Ribonuclease III domain 1041 1172 IPR000999 GO:0004525|GO:0006396
Aip01g03119 1666 PANTHER DICER-RELATED 46 1626 - -
Aip01g03119 1666 SUPERFAMILY RNase III domain-like 1211 1374 IPR036389 GO:0004525|GO:0006396
Aip01g03119 1666 CDD RIBOc 1025 1183 IPR000999 GO:0004525|GO:0006396
Aip01g03119 1666 Pfam Helicase conserved C-terminal domain 397 515 IPR001650 -
Aip01g03119 1666 Gene3D - 389 551 IPR027417 -
Aip01g03119 1666 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 233 IPR014001 -
Aip01g03119 1666 Pfam Dicer dimerisation domain 581 667 - -
Aip01g03119 1666 SMART DRBM_3 1550 1624 IPR014720 -
Aip01g03119 1666 SMART DRBM_3 1384 1448 IPR014720 -
Aip01g03119 1666 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1550 1624 - -
Aip01g03119 1666 SUPERFAMILY dsRNA-binding domain-like 1547 1623 - -
Aip01g03119 1666 Gene3D - 50 286 IPR027417 -
Aip01g03119 1666 ProSiteProfiles Ribonuclease III family domain profile. 990 1172 IPR000999 GO:0004525|GO:0006396
Aip01g03119 1666 SUPERFAMILY dsRNA-binding domain-like 1338 1448 - -
Aip01g03119 1666 CDD DEXHc_dicer 48 247 - -
Aip01g03119 1666 Pfam Type III restriction enzyme, res subunit 57 215 IPR006935 GO:0003677|GO:0005524|GO:0016787
Aip01g03119 1666 SMART ultradead3 46 251 IPR014001 -
Aip01g03119 1666 Hamap Ribonuclease 3 [rnc]. 1216 1444 IPR011907 GO:0003723|GO:0004525|GO:0006364
Aip01g03119 1666 CDD RIBOc 1229 1378 IPR000999 GO:0004525|GO:0006396
Aip01g03119 1666 Gene3D - 1556 1626 - -
Aip01g03119 1666 Gene3D - 1384 1453 - -
Aip01g03119 1666 SUPERFAMILY RNase III domain-like 1021 1187 IPR036389 GO:0004525|GO:0006396
Aip01g03119 1666 Gene3D paz domain 863 974 - -
Aip01g03119 1666 Pfam PAZ domain 876 997 IPR003100 GO:0005515
Aip01g03119 1666 ProSiteProfiles Ribonuclease III family domain profile. 1213 1356 IPR000999 GO:0004525|GO:0006396
Aip01g03119 1666 Gene3D Ribonuclease III domain 1211 1383 IPR036389 GO:0004525|GO:0006396
Aip01g03119 1666 SMART helicmild6 427 517 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03119 Aip-Chr1 134367771 134379762 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03119 415 552 Eukaryotic Initiation Factors Gene Family AT3G19760 31.206 1.64e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03119 K11592 - gmx:100818702 2495.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03119 01 134367771 134379762 Aip01g03119 01 134367771 134379762 ECH