Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03112 ATGTCCCCAACTCCAGTCTCGCCGTCTCCTCCTTACTGGTACGTCGCGTCCTCTAATCTCTTCATTGTTGGTTCGTTGCGTTCTCATCTTCTCCTCCTCGTCGGTCTTCATCTCTTATCAACAAGTCTTAGTTTCAGATGGAGATGTCTCAGCCAAACCCTAGCCCGTGGAACTTTTGGTACTGTCCACCGTAGTGTCTATGATGGCCAAGATGTTGCTGAAGGGCAACGGAGCTGCCCTGAGATCGGTAGTTGTGCAATTCACAGCCACAGTTTTTATGACGCTCCACTCGCCATTCCTCTCAAACTTGTATTACTTGGAACAATGTCACTGACTAGTAAACCCCCTCCTAAAATCAGAATTGAAGGAGAGCATTGCCCTGGTGCGGTGGTGGAATGGTACCAACGTTCTGCATCAAAGGATCAAAGACACGATTTTGACCTGAGCTTGAAGGCGAAGAAACACCTCGTTTCGTTGGGTTGGACCTTTTCTTATTGCGACAAGAAAACTCGCTGGGAACTTCGTTACAAATCCCCTTCTGGATCACAGCAATCTCAATCCAAGGTAACCGGTGGTAGGCCTCGGAGACGCAAGAAACCGAGTGACGATGAAGATTGGACTCTTCCGGAGACGCAAGTATCCAATTTAGTAAGTCCTCGTTCTGGTGAAAGTCCTGCTGCCGCAAGAAAAGTAAGGAGACGGAGTTCTTCTGATAATCGGAATCCAAGAACGATTCTTTCTTGGCTGATGGACAACAATGTGGTGGCGCAGGAGGCGTGGGTTTTCTGCCGTGGAGAATTGGTGAAGAGAGGGAAGCTGTTTCGTTCTGGTATTTTCTGCCATTGTTGTGATTCTTTATGGACACTCTCTCAATTCCAGGCTCATGCCGGTTGCAAAGGTCAACCTCCCTCTGCTAGTATCTTCTTGGAACAAGATAAAAGGTCTTTGCTGGATTGCCAGAAACAAGCATTGATGATGATCAAGGCTAACAACAATGGGGATAATGATCATCATCATGAAAATGATTCCATTTGTTCAATTTGTCTCCAGGGGGGTTTCATTCTTCTCTGTGATCACTGTCCGGCGTCATTCCACGCCGAATGTATTGGCCTTGATCATGTTCCCCCTGGTGATTGGTTCTGCCCTTCATGCTCTTGCAGACTTTGCAACCGTCCCAAATGCAGAGAGGAAAGTCATTTGGCTAACAATTTTATAGCTTGTTATCAGTGTCAACGCAGATTCCACATTGGATGTTTAGCTTCTAGAGGCTTTGCTTTTCTGAACATGGAAACCGATTGGTTTTGCAATGAAGATTGTCACAAGATATTTTTGACACTGAATAACATGTTGGGAAAACCAATTCCTGTGGGTGATGGTAATCTAACTTGGACATTGTTGACGAGCCTCAAGAAAAGCACTAATGACAATGATGACGATGGAACCATTACTGAAATGGAGAGCAAGCTAAATGTCGCACTTGGAATAATTCATGAGTGTTTTGTGCCCATCATAGATCCTGTATTTGGAAGAGACATTGCTGCAGATATTATGTTCAGCAGATATTCACGGCTGCCACGTATGAACTTTACAGGGTTCTACACTGTGATTCTAGAGAGGAATGATGAGGTGTTCTCTGTTGCAAACACAAGGATTTATGGCCAAAAGCTTGCAGAAGTGCCGCTTGTCGCGACGAGGGACCAGTATCGAAACCGGGGAATGTGTCGAATTCTGATGGATCAGCTTGAGAAGCTGTTGGTTAAGTTGGGTGTTGAGAGGTTGCTATTGCCTGCCGCTCCTTATTTAGTAGAAACTTGGACAAACTCATTTGGATTTGCAAAAATGACACACTCAGATCAGTATTACTGTGTAGGTTATCCTCTTGCAAATTTTCCAGACACAACATTGTGCCACAAATCATTGAAGCAACCTTTGATGCTGTATTGA 1944 0.4496 MSPTPVSPSPPYWYVASSNLFIVGSLRSHLLLLVGLHLLSTSLSFRWRCLSQTLARGTFGTVHRSVYDGQDVAEGQRSCPEIGSCAIHSHSFYDAPLAIPLKLVLLGTMSLTSKPPPKIRIEGEHCPGAVVEWYQRSASKDQRHDFDLSLKAKKHLVSLGWTFSYCDKKTRWELRYKSPSGSQQSQSKVTGGRPRRRKKPSDDEDWTLPETQVSNLVSPRSGESPAAARKVRRRSSSDNRNPRTILSWLMDNNVVAQEAWVFCRGELVKRGKLFRSGIFCHCCDSLWTLSQFQAHAGCKGQPPSASIFLEQDKRSLLDCQKQALMMIKANNNGDNDHHHENDSICSICLQGGFILLCDHCPASFHAECIGLDHVPPGDWFCPSCSCRLCNRPKCREESHLANNFIACYQCQRRFHIGCLASRGFAFLNMETDWFCNEDCHKIFLTLNNMLGKPIPVGDGNLTWTLLTSLKKSTNDNDDDGTITEMESKLNVALGIIHECFVPIIDPVFGRDIAADIMFSRYSRLPRMNFTGFYTVILERNDEVFSVANTRIYGQKLAEVPLVATRDQYRNRGMCRILMDQLEKLLVKLGVERLLLPAAPYLVETWTNSFGFAKMTHSDQYYCVGYPLANFPDTTLCHKSLKQPLMLY 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03112 647 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 104 643 - -
Aip01g03112 647 SUPERFAMILY FYVE/PHD zinc finger 321 386 IPR011011 -
Aip01g03112 647 SMART PHD_3 344 385 IPR001965 -
Aip01g03112 647 SMART PHD_3 386 439 IPR001965 -
Aip01g03112 647 MobiDBLite consensus disorder prediction 176 190 - -
Aip01g03112 647 Gene3D - 506 627 - -
Aip01g03112 647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 387 442 IPR013083 -
Aip01g03112 647 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 104 643 - -
Aip01g03112 647 MobiDBLite consensus disorder prediction 207 221 - -
Aip01g03112 647 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 480 632 IPR000182 GO:0016407
Aip01g03112 647 MobiDBLite consensus disorder prediction 176 242 - -
Aip01g03112 647 ProSiteProfiles Zinc finger PHD-type profile. 342 387 IPR019787 -
Aip01g03112 647 CDD NAT_SF 535 595 - -
Aip01g03112 647 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 525 628 IPR016181 -
Aip01g03112 647 Pfam Tify domain binding domain 271 323 IPR032308 -
Aip01g03112 647 Pfam PHD-finger 344 386 IPR019787 -
Aip01g03112 647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 333 386 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03112 Aip-Chr1 134295572 134299684 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03112 213 585 PHD Transcription Factor Family AT5G58610 42.494 1.93e-90 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aip01g03112 TDBD 2.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03112 - - aip:107608518 929.087