Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03110 ATGGCTTTCCACGAGCACCATATGCAGCACGAGATAGCGTTTCAGCGCTTCACCGAGGAGCAAGAACTAACAGCAGAGAATAGGGACATGCAGCAGCAGAGGGCGGCGGGGGTGGTTGCGCCGCCGACGTGGCTCAACAACCCTAGCAGTCATCATCATCGACAGCAGCAGAATTTCCTGCACCAGCTGCAACCACCACCACCACCACCGGAGACAGCGACCACGACGGAGAAGAGCATGGATCGGAACACAAGTTTCGAATCGTCTGATGAATTGAGGGAATACAAAGCAGACATCTTAGGACACCCGCTGTACGACCAGCTTCTGTCGGCTCATGTTTCTTGCCTGAGAATCGCCACACCAGTTGACCAGCTTCCACGGATCGACGCGCAGTTGCAGCAGTCGCAGCGCGTCACACATTATGTTCTGCTGCTATGTGCGTTCAAGGAACAGTTGCAGCAACATGTCCGTGTTCATGCCATGGAAGCAGTGATGGCTTGTTGGGATCTCGAGCAGTCTCTACAAAGCTTGACCGCAGGTGTATCTCCTGGGGAAGGAACGGGAGCAACAATGTCGGACGACGAAGATGAGCAAGCGGAGAGCAACGGTGGCGGCGGTGGCGGGGGGAACCTATACGAAGGAAGCTTTGACGGTGTTGATAGTCTTGGTTTTGGTCCTCTTGTGCCGACTGAGAGTGAAAGATCGTTGATGGAGCGAGTGAGGCATGAACTGAAGCATGAACTCAAACAGGGTTACAAGGAGAAGATCGTTGACATCCGAGAAGAGATTCTCCGCAAGAGAAGAGCTGGCAAGCTTCCTGGTGACACCACCTCCCTTCTCAAAGCTTGGTGGCAATCACATTCTAAATGGCCCTACCCTACTGAGGAAGACAAGGCCAGGCTGGTGCAGGAAACTGGATTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACTAACCCCTCTTCCTCTAGTAACTCTAAAACCAAGCGCAAGAGTGCAGGTGAGAGCAGTAACCAAAGCTTCATGTGA 1053 0.5204 MAFHEHHMQHEIAFQRFTEEQELTAENRDMQQQRAAGVVAPPTWLNNPSSHHHRQQQNFLHQLQPPPPPPETATTTEKSMDRNTSFESSDELREYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTAGVSPGEGTGATMSDDEDEQAESNGGGGGGGNLYEGSFDGVDSLGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSNSKTKRKSAGESSNQSFM 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03110 350 MobiDBLite consensus disorder prediction 43 61 - -
Aip01g03110 350 MobiDBLite consensus disorder prediction 320 350 - -
Aip01g03110 350 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 139 344 - -
Aip01g03110 350 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 29 138 - -
Aip01g03110 350 Pfam KNOX1 domain 95 136 IPR005540 GO:0003677|GO:0005634
Aip01g03110 350 Pfam ELK domain 243 264 IPR005539 GO:0003677
Aip01g03110 350 MobiDBLite consensus disorder prediction 41 88 - -
Aip01g03110 350 CDD homeodomain 266 327 IPR001356 GO:0003677
Aip01g03110 350 SMART KNOX1_2 93 137 IPR005540 GO:0003677|GO:0005634
Aip01g03110 350 SUPERFAMILY Homeodomain-like 265 330 IPR009057 -
Aip01g03110 350 SMART ELK_2 243 264 IPR005539 GO:0003677
Aip01g03110 350 ProSiteProfiles ELK domain profile. 243 263 IPR005539 GO:0003677
Aip01g03110 350 SMART HOX_1 265 330 IPR001356 GO:0003677
Aip01g03110 350 Pfam KNOX2 domain 139 178 IPR005541 GO:0003677|GO:0005634
Aip01g03110 350 Gene3D - 269 346 - -
Aip01g03110 350 SMART KNOX2_2 130 179 IPR005541 GO:0003677|GO:0005634
Aip01g03110 350 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 139 344 - -
Aip01g03110 350 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 29 138 - -
Aip01g03110 350 MobiDBLite consensus disorder prediction 178 212 - -
Aip01g03110 350 Pfam Homeobox KN domain 283 322 IPR008422 GO:0003677|GO:0006355
Aip01g03110 350 ProSiteProfiles 'Homeobox' domain profile. 263 326 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03110 Aip-Chr1 134260636 134264197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03110 95 345 Homeobox Transcription Factor Family AT5G11060 76.895 3.74e-147 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Aip01g03110 KNOX2 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03110 - - gmx:100781997 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03110 01 134260636 134264197 Aip01g03110 01 134260636 134264197 ECH