Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03105 ATGTCACTGACTCGTAAACCCCCTCCTGATATCAGAATTAAAGGAGAGAATTGCCCTGGTGCTGTGGAATGGTACCAATCAAAGGATCAAAGACACGATTTTGACCTGAGGTTGAAGGCGAAGAAACACCTCGTTTCGTTGGGTTGGACCCTTTCTTATTGCGACAAGAAAACTCGCTGGGAACTTCGTTACAAATCCCCTTCTGGTAAGACCTATATTTCTCTCAGAACTGCATGCAAAGCCTGCATTGAAGAGAAAAAGAAAGATTCTTCATCTAGTTCCAATTCATTGCAAGGATCACCATCTTCTGCTGAACAACCAACGAGTTCCAAGGTAACCGGTGGTAGGCCTCGGAGACGCAAGAAACCGAGTGACGATGAAGATTGGACTCTTCCGGAGACGCAAGTATCCAATTTAGTAAGTCCTCGTTCTGGTGAAAGTCCTAATGCTGCAAGAAAAGTAAGGAGACGGAGTTCTTCTGATAATCGGAATCCAAGAACGATTCTTTCTTGGCTGATGGACAACAATGTGGTGGCGCAGGAGGCGTGGGTTTTCTGCCGTGGAGAATTGGTGAAGAGAGGGAAGCTGTTTCGTTCTGGTATTTTCTGCCATTGTTGTGATTCTTTATACACACTCTCTCAATTCCAGGCTCATGCCGGTTGCAAAGGTCAACCTCCCTCTGCTAGTATCTTCTTGGAACAAGATAAAAGGTCTTTGTTGGATTGCCAAAAACAAGCATTGATGATGATCAAGGCTAACAACAATGGGGATAATGATCATCATCATGAAAATGATTCCATTTGTTCAATTTGTCTCCAGGGGGGTTTCATTCTTCTCTGTGATCACTGTCCGGCGTCATTCCACGCCGAATGTATTGGCCTTGATCATGTTCCCCCTGGTGATTGGTTCTGCCCTTCATGCTCTTGCAGAATTTGCAACCGTCCCAAATGCATAGAAGATTCTTGTAGAGAGGAAAGTCATTCGGCTAACAATTTTATAGCTTGTTATCAGTGTCAACGCAGATTCCACATTGGATGTTTAGCTTCTAGAGGCTTTGCTTTTCTGAACATGGAAACCGATTGGTTTTGCAATGAAGATTGTCACAAGATATTTTTGACACTGAATAACATGTTGGGAAAACCAATTCCTGTGGGTGATGGTAATCTAACTTGGACATTGTTGACGAGCCTCAAGAAAAGCACTAATGACAATGATGACGATGGAACCATTACTGAAATGGAGAGCAAGCTAAATGTCGCACTTGGAATAATTCATGAGTGTTTTGAGCCCATCATAGATCCTGTATTTGGAAGAGACTTTGCTGCAGATATTATGTTCAGCAGATATTCATTGCTGCCACGTATGAACTTTACAGGGTTCTACACTGTGATTCTAGAGAGGAATGATGAGGTGATCTCTGTTGCAAACACAAGGATTTATGGCCAAAAGCTTGCAGAAGTGCCGCTTGTCGCGACCAGGGACCAGTATCGAAACCGGGGAATGTGTCGAATTCTGATGGATCAGCTTGAGAAGCTGTTGGTTAAGTTGGGTGTTGAGAGGTTGCTATTGCCTGCTGCTCCTTATTTAGTAGAAACTTGGACAAACTCATTTGGATTTGCAAAAATGACACACTCAGATCAGTATTACTGTGTAGGCTATCCTCTTGCAAATTTTCAAGACACAACATTGTGCCACAAATCATTGAAGCAACCTTTGATGCTGTATTGA 1728 0.4306 MSLTRKPPPDIRIKGENCPGAVEWYQSKDQRHDFDLRLKAKKHLVSLGWTLSYCDKKTRWELRYKSPSGKTYISLRTACKACIEEKKKDSSSSSNSLQGSPSSAEQPTSSKVTGGRPRRRKKPSDDEDWTLPETQVSNLVSPRSGESPNAARKVRRRSSSDNRNPRTILSWLMDNNVVAQEAWVFCRGELVKRGKLFRSGIFCHCCDSLYTLSQFQAHAGCKGQPPSASIFLEQDKRSLLDCQKQALMMIKANNNGDNDHHHENDSICSICLQGGFILLCDHCPASFHAECIGLDHVPPGDWFCPSCSCRICNRPKCIEDSCREESHSANNFIACYQCQRRFHIGCLASRGFAFLNMETDWFCNEDCHKIFLTLNNMLGKPIPVGDGNLTWTLLTSLKKSTNDNDDDGTITEMESKLNVALGIIHECFEPIIDPVFGRDFAADIMFSRYSLLPRMNFTGFYTVILERNDEVISVANTRIYGQKLAEVPLVATRDQYRNRGMCRILMDQLEKLLVKLGVERLLLPAAPYLVETWTNSFGFAKMTHSDQYYCVGYPLANFQDTTLCHKSLKQPLMLY 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03105 575 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 408 560 IPR000182 GO:0016407
Aip01g03105 575 Pfam PHD-finger 267 309 IPR019787 -
Aip01g03105 575 Pfam Tify domain binding domain 194 246 IPR032308 -
Aip01g03105 575 MobiDBLite consensus disorder prediction 130 145 - -
Aip01g03105 575 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 309 IPR013083 -
Aip01g03105 575 MobiDBLite consensus disorder prediction 92 113 - -
Aip01g03105 575 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 370 IPR013083 -
Aip01g03105 575 Gene3D - 404 573 - -
Aip01g03105 575 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 444 556 IPR016181 -
Aip01g03105 575 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 571 - -
Aip01g03105 575 CDD NAT_SF 463 523 - -
Aip01g03105 575 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 10 571 - -
Aip01g03105 575 SMART PHD_3 267 308 IPR001965 -
Aip01g03105 575 SMART PHD_3 309 367 IPR001965 -
Aip01g03105 575 MobiDBLite consensus disorder prediction 87 166 - -
Aip01g03105 575 ProSiteProfiles Zinc finger PHD-type profile. 265 310 IPR019787 -
Aip01g03105 575 SUPERFAMILY FYVE/PHD zinc finger 244 309 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03105 Aip-Chr1 134199059 134200786 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03105 136 513 PHD Transcription Factor Family AT5G58610 42.462 1.01e-91 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aip01g03105 TDBD 2.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03105 - - aip:107608518 994.186