Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03101 ATGGGTTCCGCCACCAGTAGACTAGAGGGTTCTCGCCCTCCCACGCCGAGGCTCAACCGCAACAACACACGCTTCAGCCTCTCCTCTCTTCTCTGCGGTGCTTCCACCTCTCGCTCCACCTATCAGATGGAAGAACATCCATCTGAACTTCAGGTAGATTTAGCAACAGAACCTGATGGTGGAACTCAGGATATCACTGAGGAATCATCTTTATCCTGTACAGAAGCTAGAATCAGCTGCAGCCACCATGCTGAAGCCGCTACCTCATCCAATACAAGAACTGAGTCTCATCAGTATATTGGTGTTGAAGGTTCTTCCATAAATGTTGCAGCAAGTAGTCAGAGGAAGTGCTTGTCTGAATGTAAGGAGCTAGTCCCTCCTCATCAGGTAAGTGCTGGTCATAGTGGTAATGAATCATATAGGGATAGTAGCAATACAGCTAGTACTTCTTTTGTAGATCAACAATCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAAGATGGAGTCAATAATGTTGATGATCCAGTGGTTAGTGGTGTATCTCAAATCTCACATGAGACCGTGCATCCATGGAGTTCGAGCCCTCGGGAGAATGGATATTTTAGTTCTGGGGAAATTTCTGTTGAGAATGATGCATTAATGGCTACCCAAATTGATGTTGTCACAATATCCTCCAACATCTTGTCTGGCAGCACTGCTGATGCCAATGATCATGATACCGGAAGGAGTGGTAGAAGAATATTTTGGGATGCTTTTTCACGGCGTAGTTCTAGAAGGCTTGGCGACTCTCAAACAATTGTCTTCTCTGCTGGCGGTGCCGATGATCCTAGATCTCAAGATAGATGGCTTGTTGATCTTGGTGGGGATTTCTCCAACGATGGGTTTGGAGGTGCTTCTTCTGGATATGTAGGCAGTAGAATTCACAGATTTAATGAAAGAATGCGGCACTCAAGATCCGAGATCTGGGAAAGGCTTCGAGGTGGCCTTGATGATTTTGGTCGTTTGAATTCTTCATGTCCATCAGGACTTCATGCAGATGGTATGTGCTCATGTGAGTCTTTACCAACAGCTGAAGAATCTAGCACTCGAGCAAGTATTTCAAGAATTGTCATGCTGGCTGAAGCACTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGTATCGCTTTCCCTATCCATGGTTTCTCTCCCCGCACCTGAATCAGTTGTCGACTCTTTTCCTCTTAAGTCTCACAAAAAGGTCGATGCAGCTGACGGTGGCAGTGATGCTGAACAATGTTACATATGTTTGGCGGAGTATGAAGAAGGGGACCAAATAAGAGTTCTTCCTTGCAACCATGAGTATCACATGTCGTGCGTTGATAAGTGGCTTAAAGAAATACATGGCGTATGCCCTCTTTGTCGTGGCAATGTTTGTGGAGGGTTCACGGAGTCTTCTGCCAACTCAGTGCCATCTCATTGA 1470 0.4544 MGSATSRLEGSRPPTPRLNRNNTRFSLSSLLCGASTSRSTYQMEEHPSELQVDLATEPDGGTQDITEESSLSCTEARISCSHHAEAATSSNTRTESHQYIGVEGSSINVAASSQRKCLSECKELVPPHQVSAGHSGNESYRDSSNTASTSFVDQQSSDPVSVNVSANKDGVNNVDDPVVSGVSQISHETVHPWSSSPRENGYFSSGEISVENDALMATQIDVVTISSNILSGSTADANDHDTGRSGRRIFWDAFSRRSSRRLGDSQTIVFSAGGADDPRSQDRWLVDLGGDFSNDGFGGASSGYVGSRIHRFNERMRHSRSEIWERLRGGLDDFGRLNSSCPSGLHADGMCSCESLPTAEESSTRASISRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESVVDSFPLKSHKKVDAADGGSDAEQCYICLAEYEEGDQIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSANSVPSH 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03101 489 MobiDBLite consensus disorder prediction 132 170 - -
Aip01g03101 489 MobiDBLite consensus disorder prediction 1 24 - -
Aip01g03101 489 MobiDBLite consensus disorder prediction 127 178 - -
Aip01g03101 489 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 219 484 - -
Aip01g03101 489 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 213 - -
Aip01g03101 489 SMART ring_2 429 470 IPR001841 -
Aip01g03101 489 Pfam Ring finger domain 428 471 IPR001841 -
Aip01g03101 489 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 219 484 - -
Aip01g03101 489 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 213 - -
Aip01g03101 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 475 IPR013083 -
Aip01g03101 489 ProSiteProfiles Zinc finger RING-type profile. 429 471 IPR001841 -
Aip01g03101 489 SUPERFAMILY RING/U-box 416 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03101 Aip-Chr1 134169930 134172840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03101 343 475 C3H Transcription Factor Family AT5G45290 55.102 2.95e-43 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03101 - - gmx:100783604 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03101 01 134169930 134172840 Aip01g03101 01 134169930 134172840 ECH