Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03098 ATGGCTGAACAAACCGAGAAGGCTTTTCTCAAGCAACCTAAAGTGTTTCTATGGGATGCCATTGAAGGAACCTATATTGACAAGAAATGCCCCTTTACCGGAACTGTTTCCATCCGTGGCCGAATCTTAGCTGGAACTTGTCACAGTGCTAAGATGAATAGGACTATCATTGTTAGGAGGAATTATCTTCATTTTATCAAGAAGTATCAGAGATACGAGAAAAGACATTCGAATATTCCTGCACATATATCACCCTGCTTCCGTGTGAAGGAAGGAGATCATGTTATTATTGGCCAATGCAGGCCACTTTCAAAGACGGTGAGGTTCAATGTGTTGAAAGTGATCCCAGCTGGATCTTCAAGTGGTGCAAAGAAGGCATTTGCTGGAATTTGA 393 0.4198 MAEQTEKAFLKQPKVFLWDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFAGI 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03098 130 Gene3D - 1 129 - -
Aip01g03098 130 Pfam Ribosomal_S17 N-terminal 19 43 IPR032440 -
Aip01g03098 130 PANTHER BNAA06G38660D PROTEIN 19 129 - -
Aip01g03098 130 PRINTS Ribosomal protein S17 family signature 59 82 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aip01g03098 130 PRINTS Ribosomal protein S17 family signature 92 102 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aip01g03098 130 PRINTS Ribosomal protein S17 family signature 102 109 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aip01g03098 130 TIGRFAM uS17_arch: ribosomal protein uS17 27 114 IPR028333 -
Aip01g03098 130 Pfam Ribosomal protein S17 45 113 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aip01g03098 130 SUPERFAMILY Nucleic acid-binding proteins 39 118 IPR012340 -
Aip01g03098 130 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 19 129 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aip01g03098 130 ProSitePatterns Ribosomal protein S17 signature. 92 104 IPR019979 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03098 Aip-Chr1 134150473 134151877 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03098 1 130 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 73.585 1.27e-80 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03098 K02949 - rcu:8266659 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03098 01 134150473 134151877 Aip01g03098 01 134150473 134151877 ECH