Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03097 ATGGGCAGCGGCAGCAGCTTCAGGGTTAGCTCCAAGGCCATGATGATGTCGAAGGCTTCATGTGGCAACAAATATTTGGATCATATCGCATTGGACAGCGGTGAAAGCGCCAAAGCTTCATCACCTTCCAAGTTCCAACTCTTGTTCTCCTTCAACTTCAATCAAGATACCCTAATTCTCTCAACACCACTTCCACTTCACTCTCTCCTCTCACTCAAACCCCAAAGGTGTTGCGCGGTCTTGTGGAGAATGGGAAGTACTGGTACTGACAAGATGCCAGGCAATAACAGCACAGGAAGTTCAGAAACCACTATTGAGATAAAGATCAAGACCTTGGATTCACAGACTTACACCCTCAGAGTGGATAAACAGATGCCAGTCCCTGCTCTGAAAGAACGGATTGCTTCTGTCACTGGAGTGTTATCACATCGGCAGCGCTTAATTTGCCAAGGAAAGGTTCTGAAGGACGATCAACTCCTGTCTGCTTACCATGTTGAAGATGGTCATACCTTGCATCTGGTTTCTAGGCAACCTGATCTACCAGGATTTTTGCCCGGTCATTCAGGGGCTGACCCAAATTCAAGCACAAGTCATGGCCACAGTAGTCAAATATCCCCGGGTGTAGTCATTGAAACTTTCAATGTGCCTGTTCAGGGAGATGGAGTTACTCCTGAATTCAGTAGGATTGTTTCTGCTGTACTAGGCTCTATTGGAATTCCAAACTTCGGAAGTGGTGTTGAAGGGATTGATGTCAGGGAGCATGACTCCCAAGGCTTTGGAAGAACTTCAGGTTCCAGTGGTCTTTCAGATTCATCCCATCCTCAGCCTGAACAAACTGGTTTGCGGTATTCATCAGATAGGTCGCGTAATACCTTTGTACATCCAGCAGCAGCTTCTTTGGGATCTTTGCAGCCTCCTGTTATTCCCGATTCTTTGACAACACTATCCCAATTTCTGAGTCATATAAGTCACGAATTTGATGCAATTGTCAGAGAAGGGGGCAATAATGTCCAAGCAGCTGAGGCTCATAGGAATGAAGAAATGGGGTCTGCTTCGTCACGATTGGGTTCAACAGCAGAAGCACTTACATCACCTGCATCCTTGGCAGAAGTCATGCTATCTACCAGACGAATGATGATTGAACAAGCTGGGGAATGCCTACTTCAACTTGCAAGACACCTGGAGAATCAGGCAAATGTAACTGATCATTTGATGCGGTCAAGCATTCAGTCTAGAGCTTTGAGGACTGGAGTTCTGTTCTATAACCTGGGTGCATTATTCCTTGAGCTTGGCCGCACAACCATGACATTGCGCTTGGGTCAAAGTCCGTCTGAAGCTGTAGTTAATGGTGGGCCTGCAGTTTTCGTATCTCCGTCTGGTCCTAACCATATCATGGTTCAGCCTCTTCCTTTTCAACCTGGAGCGAACTTTGGTACTGTCCCCATAGGAACTGCTCAGTCTAACGCAAGTTTAGGTAGTGGACTTGGTTCAAGTTTTTTCCCAAGGCGGATTGATATACAGATACGACGAGGGGTCTCAACAGCCACACCAAATGCCAGTCAAGAAGAACGTGCTGATACACAGTCTGCTTCAGTACAAAGAAATCAAGGTGAAGGTCCTGCTAATCAGGCAGCCTCAAGGCGTTCAGATGTGGCTGGTGCTGGGGAGCAAGGAGTAAGGATTGTGCCAATTAGAACCATGGTTGCAACAGTACCAGGTTCCTTAGGTCGTCCACCTTCAGAACCATCTGGTAATTCTATAGGGGTTTACTATCCGGTTCTCGGGAGATTTCAACAGGTATCTTCAGGGCATGGGAATAGTGAACAAGGATCTCAACCAGCTAGTCAGCATCATGCTGTGCAACAGTCCAGTCATGAAAACACATTGCAAAGGCAAAACGAAGATTCTGCAAGGAATGGATCCTCATCAACTCCTACCACAAGCTCGAATTCCCGTGTGGTGAATATCAATATCCTAGCAGCTGGTGGGGCCCAGAATAATCAGGAGTCTGAGCGACAGATACCAAACAGTGTTCTTCAGTTTATAAGGACCCTGTTTCCTGGGGGAGAAATTCATGTTGAAGACTTGAATTTACAGGGAACAAATTCAGGTTCTACCCCAGAGCAAGCTGCAACAGCAAGGGCAGCTCAGGCCCCTGAAGCTGAACCTAGGGTTAGTGATGAAGGAAGGTTTTTGTCAAACATACTCCGCGAAATCATTCCCCTCGTGTCTCAACAAACAGGCTCTGGAAGAAATCCTTCAGAGGAACAAGCAGCTCAGGATTCTTCATCACAGGTGGAAACTGATGCAGGGACATCACGAAGGCGGAATGGTTCAGATCCAAGCCCCCCTGATTCTAAACGCCAAAAGATGGAGTGA 2379 0.4695 MGSGSSFRVSSKAMMMSKASCGNKYLDHIALDSGESAKASSPSKFQLLFSFNFNQDTLILSTPLPLHSLLSLKPQRCCAVLWRMGSTGTDKMPGNNSTGSSETTIEIKIKTLDSQTYTLRVDKQMPVPALKERIASVTGVLSHRQRLICQGKVLKDDQLLSAYHVEDGHTLHLVSRQPDLPGFLPGHSGADPNSSTSHGHSSQISPGVVIETFNVPVQGDGVTPEFSRIVSAVLGSIGIPNFGSGVEGIDVREHDSQGFGRTSGSSGLSDSSHPQPEQTGLRYSSDRSRNTFVHPAAASLGSLQPPVIPDSLTTLSQFLSHISHEFDAIVREGGNNVQAAEAHRNEEMGSASSRLGSTAEALTSPASLAEVMLSTRRMMIEQAGECLLQLARHLENQANVTDHLMRSSIQSRALRTGVLFYNLGALFLELGRTTMTLRLGQSPSEAVVNGGPAVFVSPSGPNHIMVQPLPFQPGANFGTVPIGTAQSNASLGSGLGSSFFPRRIDIQIRRGVSTATPNASQEERADTQSASVQRNQGEGPANQAASRRSDVAGAGEQGVRIVPIRTMVATVPGSLGRPPSEPSGNSIGVYYPVLGRFQQVSSGHGNSEQGSQPASQHHAVQQSSHENTLQRQNEDSARNGSSSTPTTSSNSRVVNINILAAGGAQNNQESERQIPNSVLQFIRTLFPGGEIHVEDLNLQGTNSGSTPEQAATARAAQAPEAEPRVSDEGRFLSNILREIIPLVSQQTGSGRNPSEEQAAQDSSSQVETDAGTSRRRNGSDPSPPDSKRQKME 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03097 792 MobiDBLite consensus disorder prediction 254 288 - -
Aip01g03097 792 Pfam Ubiquitin family 107 177 IPR000626 GO:0005515
Aip01g03097 792 ProSiteProfiles Ubiquitin domain profile. 105 180 IPR000626 GO:0005515
Aip01g03097 792 MobiDBLite consensus disorder prediction 600 653 - -
Aip01g03097 792 MobiDBLite consensus disorder prediction 180 204 - -
Aip01g03097 792 MobiDBLite consensus disorder prediction 189 204 - -
Aip01g03097 792 SMART ubq_7 105 176 IPR000626 GO:0005515
Aip01g03097 792 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 84 792 - -
Aip01g03097 792 MobiDBLite consensus disorder prediction 258 288 - -
Aip01g03097 792 MobiDBLite consensus disorder prediction 512 543 - -
Aip01g03097 792 Gene3D - 98 182 - -
Aip01g03097 792 MobiDBLite consensus disorder prediction 743 779 - -
Aip01g03097 792 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 84 792 - -
Aip01g03097 792 SUPERFAMILY Ubiquitin-like 100 178 IPR029071 -
Aip01g03097 792 MobiDBLite consensus disorder prediction 512 558 - -
Aip01g03097 792 CDD Ubl_ubiquitin_like 107 174 - -
Aip01g03097 792 MobiDBLite consensus disorder prediction 743 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03097 Aip-Chr1 134117969 134129521 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03097 105 176 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 4.45e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03097 K23390 - gmx:100783070 998.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03097 01 134117969 134129521 Aip01g03097 01 134117969 134129521 ECH