Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03073 ATGGGAAAACGCAAACGAATTTCTCATCACTCTCACCCCCAATCCGATCCTCACAACCCTTCTCCTTCTTCAACCGAAGCCATTCTCCACTCTTCTAACATGGAACTATTGTCAGATGAGAAACCTTCACATTCAGGCAACTCTAGTGCACCCCCTATGCAACCCGGACTGGATATGATAGATGGATCTATGAAGCTACTGAATACCCATCCAACTATGCCGCATCATCATCATCAGGGTCTTGGCCGTTCAATATTTTTGAAGCGTTCAAGACATTACTATGGTCACCAGTATTCACGACGCAACTCTGCCAATCATGCCAATGCATCGTCTTCTCGTGGCAAGGGTGTTTCTTCGTATGATGATAGACTTCCTTTTAAGTTGGCTTATCAACCCAACTCACAATCGAGACAGCTTGTTGAATACAGAGAGAAGACATTTTCCAGACCGGAGAGAATCCGGTCAAGTTCAATAGCAATGGATGCAGTATCCCCCGATGCCGTGAAGACGGTTTGTGCGATTTGTCAGAAGCCACTGAGGCGGAAATTTAATCTTCTCGGAGGTTCACTTTCTTGCTGTGAACTCTCTGTTGTGGCCGTTTTAGTATGCGGTCACATTTATCATGCGGATTGTCTGGAGCAGAGAACTTGTATTGAAGAAATACGGGACCCCTCATGTCCTGTGTGTTTAGGTCTACTTCTGCAGGTTAAAGGACAtgtgaaggtgaagcgggtgaaggaagaaagggagcattccgacccatggcatccgacagagCTCGGCCACAAGTCCGACGGCCAGACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCCTCAATCATCGCTGCCACCGGAATCGGAACCACTCCCGCTAGCTTCTCCTCCGTTTCCGTCTCCGTATGCAGCGGTGCTGGCTCTCTCTCTTCTCCTTCCTCAACCTCCGCATCGTCTTCGCTCGACCACAAGCCCTTGCTCGCTCCCACTCCCTTCATGATGCAGCAGTTCTCAACGGGAAGCTTCTCGTCAAGGAAGGCTGGTTATGACCCTTTTATAGAAGGCTGGACCGGTTCAAGTGTCATTGTTTATGGCCACTTGTTTGTTGTCTCTGAGCTCGAAAGAATGAAGCTAAAGGTCTATGACACAAAAACAGACTCCTGGGATGCCATAGATGGCCCCCCTTTGCCTGAGCAAATATGCAAGCCTTTTGCTGTCAATGCTTGCGATTGCCATATTTATGTTGTGGGCCGAAATCTTCATGTTGCTGTTGGTCATATCTCTAGACTGCTTCCAGACGAAAATTCTGACGAAAAATGGAGCTTCAGTGTCCGGTGGCATGTAATCGATGCACCGGAGAGTTTATCTGATCTCACTCCTTCAAGCTCTCAGGTGCTGTTTGCATAA 1401 0.4625 MGKRKRISHHSHPQSDPHNPSPSSTEAILHSSNMELLSDEKPSHSGNSSAPPMQPGLDMIDGSMKLLNTHPTMPHHHHQGLGRSIFLKRSRHYYGHQYSRRNSANHANASSSRGKGVSSYDDRLPFKLAYQPNSQSRQLVEYREKTFSRPERIRSSSIAMDAVSPDAVKTVCAICQKPLRRKFNLLGGSLSCCELSVVAVLVCGHIYHADCLEQRTCIEEIRDPSCPVCLGLLLQVKGHVKVKRVKEEREHSDPWHPTELGHKSDGQTIEWLLRQAEPSIIAATGIGTTPASFSSVSVSVCSGAGSLSSPSSTSASSSLDHKPLLAPTPFMMQQFSTGSFSSRKAGYDPFIEGWTGSSVIVYGHLFVVSELERMKLKVYDTKTDSWDAIDGPPLPEQICKPFAVNACDCHIYVVGRNLHVAVGHISRLLPDENSDEKWSFSVRWHVIDAPESLSDLTPSSSQVLFA 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03073 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 232 IPR013083 -
Aip01g03073 466 MobiDBLite consensus disorder prediction 14 52 - -
Aip01g03073 466 SUPERFAMILY RING/U-box 171 236 - -
Aip01g03073 466 SUPERFAMILY Kelch motif 349 417 IPR015915 GO:0005515
Aip01g03073 466 MobiDBLite consensus disorder prediction 98 117 - -
Aip01g03073 466 Pfam TCP family transcription factor 259 315 IPR017887 -
Aip01g03073 466 ProSiteProfiles Zinc finger RING-type profile. 172 229 IPR001841 -
Aip01g03073 466 PANTHER EXPRESSED PROTEIN 1 236 - -
Aip01g03073 466 MobiDBLite consensus disorder prediction 98 118 - -
Aip01g03073 466 MobiDBLite consensus disorder prediction 1 81 - -
Aip01g03073 466 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 1 236 - -
Aip01g03073 466 CDD RING-H2 172 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03073 Aip-Chr1 133867473 133872919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03073 259 334 TCP Transcription Factor Family AT5G23280 63.291 2.76e-20 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Aip01g03073 TCP 3.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03073 - - mtr:MTR_4g115930 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03073 01 133867473 133872919 Aip01g03073 01 133867473 133872919 ECH