Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03065 ATGCCGTTGGCGTTGAGGAAAGACACGGTTAATGGTGACCCTGAGTCTCTTCACCAACCTTTGCTTTCTTCCCAAAGATCCTTAGTCAACTCTACTTCTCAGGTTGCCATCGTAGGCTCCAATGTCTCCCCAATTGAGAGCCTTGACTACGAGATCATAGAGAACGAGTTCTTCAAGCAGGATTGGAGGAGCAGAGGGGCCTCTCAGATATTCCAATACATATTCATGAAGTGGCTCTTGTGCTTCCTCATTGGTTTGATCGTTAGCCTCATCGCATTCTGCAACAATCTCGCTGTTGAGAATCTCGCTGGCATCAAGTTTGTTATCACATCCAATATGATGTTGGAAAGGAGGTTTCTGTTGGCATTTGCAGTATTTTTCGCTTCGAATTTGGGTCTCACTATCTTTTCTGCTGTAATCACGGCTTTGATAGCACCGGCAGCTACTGGTTCCGGTATACCGGAGGTGAAGGCTTACCTAAATGGGGTGGATGCACCTGGAATTTTTACTGTACGGACTCTGTTTGTTAAGATTATTGGAAGCATTACAGCAGTGTCATCATCTCTTCTTATTGGGAAAGCAGGGCCCTTGGTCCATACAGGTGCATGTGTGGCATCGTTGTTGGGGCAGGGCGGGTCGAAGAGATATGGTTTAACGTGGAAGTGGTTACGCTTTTTTAAGAATGACCGAGATCGACGAGATTTGGTAATGTGTGGATCAGCTGCTGGAATTGCTGCTGCCTTTCGTGCCCCAGTTGGTGGGGTGTTGTTTGCTCTTGAAGAGATGACATCTTGGTGGAGAAGTGCACTTCTCTGGAGAGCTTTCTTCACAACAGCAATAGTTGCAATTGTGCTTCGTGCTATGATTGATGAGGGATTCTTGGAAGCTTATATAACTTTATGCTTAGCAAAGTTCTTCGTGTATACAATTTTATCAATGAGAAAGGCACCATATGCAAAATTGTGCTTGCCTGTAGCCTTGTCCAACAATAGGCCGATCCGGCAACTTCAAGAAATTCCAATGCCCACCCGATCACTACAATGA 1044 0.455 MPLALRKDTVNGDPESLHQPLLSSQRSLVNSTSQVAIVGSNVSPIESLDYEIIENEFFKQDWRSRGASQIFQYIFMKWLLCFLIGLIVSLIAFCNNLAVENLAGIKFVITSNMMLERRFLLAFAVFFASNLGLTIFSAVITALIAPAATGSGIPEVKAYLNGVDAPGIFTVRTLFVKIIGSITAVSSSLLIGKAGPLVHTGACVASLLGQGGSKRYGLTWKWLRFFKNDRDRRDLVMCGSAAGIAAAFRAPVGGVLFALEEMTSWWRSALLWRAFFTTAIVAIVLRAMIDEGFLEAYITLCLAKFFVYTILSMRKAPYAKLCLPVALSNNRPIRQLQEIPMPTRSLQ 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03065 347 PRINTS Plant CLC chloride channel signature 262 270 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aip01g03065 347 PRINTS Plant CLC chloride channel signature 276 286 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aip01g03065 347 PRINTS Plant CLC chloride channel signature 51 59 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aip01g03065 347 SUPERFAMILY Clc chloride channel 55 300 IPR014743 -
Aip01g03065 347 Gene3D Clc chloride channel 69 325 - -
Aip01g03065 347 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 17 290 - -
Aip01g03065 347 Pfam Voltage gated chloride channel 135 294 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aip01g03065 347 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 17 290 - -
Aip01g03065 347 PRINTS Chloride channel signature 177 196 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aip01g03065 347 PRINTS Chloride channel signature 241 260 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aip01g03065 347 PRINTS Chloride channel signature 146 163 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03065 Aip-Chr1 133787422 133789712 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03065 15 290 Ion Channels AT5G33280 77.536 6.79e-154 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03065 K05016 - gmx:100817901 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03065 01 133787422 133789712 Aip01g03065 01 133787422 133789712 ECH