Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03037 ATGTTTAAGGTCTTTAGTTCCAATTCTAAGACTCTTAACCAACAAAGTAGTGCGTCGAATAATCCATTGTTGCTATGTTGTATTGAGAAGGCCAAGACAGATCTGTCCATTGCTAAAAAAAGGAGAACAGATCCACTTGCTCCAATCAATATTCCTGGATTAGAGCTACCTAGTTGGGTGCAAGTCTGTTTTAGACCAACAGCTTCAATGGGTTTGGACGAAACTGAACTTGCAATTGCAGCATACTTGTATGGTAATCATTTGATGGATAAGTCTTTATCCCTGTATCTGAAACTACTGACGAAGGTCATGAACACTGAGCCAGAAGGCCTTCCGACTCTCGAAGCTGGATCGAGTGACGCAGGTGTGTGGGTTGCTAGTTGGATGATAGCTTGTTTTGAAGATGATCATTTTAACATAAAGTTCTTTTATATGAGATCTGCTGTATTGGATACTATTTCGGAAGGAAAGGATGAGGTTAACCTCACAGTTAGTGATTCTACTACCTTTGGTTTGTCATCCGAATCACGTCCTGAAAAAGCTGAAGCCATGCCAGATGTATTGCCTGAAAATGATATCCAAACTGGTGAAAATGTAATAGATTTCAGTCTGATATCTGCTGCATTGGATACTAATTCGAAAGGGAAGGACAAGATTAGGTCTGATCAGGATGAAGATGAAATTATAACCCCTTCTGATGCTGTTGTGGGTGAAACATGTGAAGGGGAGTCTAAAATGGCAGTTAAGGATGCAATGAATGTTGGCTCGTCAACTGTATCAGATCCCCACAAAGCTGAAGTGATGCCAGATGTATTGCCTGAAAATAAGATATATGCTGATGAAAATGTGAGAGATTGCGTTTTTACATCTGAACTGGGGACTAGTTTGAAGGGAAAGGATGAGATCAAAACAGATGTTGAAGAAGTTGAAATTATAGTCCCTTCGAATACTGGTGTTGGTGAAAATGAAGTTGACAGGCCTTTCAGCCAAGAAGATTACAATAGATTAAGACCTTTAAGCTATCGAGGAGCTGATGTATTCCTGCTAGCATTCTCTCTCATAAGCAGGGCTAGCTATGAAAATGTTGCCAAGAAATGGATTCCTGAGTTGAGGCATTATGCTCCTGGTGTTCCAATTATTCTTGTTGGAACAAAACTTGCGCCTATCACCACAGTGCAGGGTGAGGAACTGAGAAAACTTATCGGTGCTCCAGTTTACATCGAATGTAGTTCAAAAACACAGCAGAATGTGAAGGCTGTTTTTAATGCGGCCATCAAAGTAGTTCTCCAGCCTCCAAAGCAGAAGAAAAAGAAGAGAAAGGTCTTTGCCATTCTATATCTTTGTAGCATAACACATGATGGTGTTGGTGTTCCGGAAACATTACTAAACCAAATGTTCGGACGAGAAGGACAAGAATCCGAGGAGGGTATTAGTCTGCTCATCAGCAGAAAGTTGCTGAAGCTGATGAATGGAGACGTGCAGTATCTGAGGGAAGCTGGCAAATCATCTTTCATCTTAACAGTTGAACTGGCTGCTTCCCAGAAATTGATTGCTTAA 1557 0.4085 MFKVFSSNSKTLNQQSSASNNPLLLCCIEKAKTDLSIAKKRRTDPLAPINIPGLELPSWVQVCFRPTASMGLDETELAIAAYLYGNHLMDKSLSLYLKLLTKVMNTEPEGLPTLEAGSSDAGVWVASWMIACFEDDHFNIKFFYMRSAVLDTISEGKDEVNLTVSDSTTFGLSSESRPEKAEAMPDVLPENDIQTGENVIDFSLISAALDTNSKGKDKIRSDQDEDEIITPSDAVVGETCEGESKMAVKDAMNVGSSTVSDPHKAEVMPDVLPENKIYADENVRDCVFTSELGTSLKGKDEIKTDVEEVEIIVPSNTGVGENEVDRPFSQEDYNRLRPLSYRGADVFLLAFSLISRASYENVAKKWIPELRHYAPGVPIILVGTKLAPITTVQGEELRKLIGAPVYIECSSKTQQNVKAVFNAAIKVVLQPPKQKKKKRKVFAILYLCSITHDGVGVPETLLNQMFGREGQESEEGISLLISRKLLKLMNGDVQYLREAGKSSFILTVELAASQKLIA 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03037 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 329 429 IPR027417 -
Aip01g03037 518 Pfam Ras family 330 429 IPR001806 GO:0003924|GO:0005525
Aip01g03037 518 SMART rho_sub_3 311 431 IPR001806 GO:0003924|GO:0005525
Aip01g03037 518 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 328 441 - -
Aip01g03037 518 PANTHER RHO FAMILY GTPASE 328 441 IPR003578 GO:0005525|GO:0007264
Aip01g03037 518 Gene3D - 299 443 IPR027417 -
Aip01g03037 518 ProSiteProfiles small GTPase Ras family profile. 255 480 IPR001806 GO:0003924|GO:0005525
Aip01g03037 518 Coils Coil 510 518 - -
Aip01g03037 518 SMART ras_sub_4 306 431 - -
Aip01g03037 518 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 440 510 IPR003594 -
Aip01g03037 518 ProSiteProfiles small GTPase Rho family profile. 176 428 - -
Aip01g03037 518 SMART rab_sub_5 309 431 - -
Aip01g03037 518 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 446 507 IPR036890 -
Aip01g03037 518 ProSiteProfiles small GTPase Rab1 family profile. 232 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03037 Aip-Chr1 133429321 133433685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03037 450 515 Histidine Kinase Gene Family AT1G09570 72.727 7.24e-24 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03037 K04392 - aip:107644337 329.331