Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03033 ATGGATAAATGGGATCTTGAACTCGGTCTTGCTCTCCCAAGCAATTCACCTTGTGCAGGCTCTAATGATGATATGGAGGAGGAAGAGGAAGAAGAAGAGGAAGGGGAGAAGGTTACACATCCCACTCTGTGTCTCCTTCCGTTAACCCCTGGCCACTCATGGAGGAAGAAACGGCATAGGATGTATGTGAAGGTGAAGATGGAAGGTGTAGGGATTGCAAGAAAGGTTGATCTCACCATGCACCATTCATTTCACACCCTTAACCATGCCTTGCTCCACATGTTTGGAAAACCCCCTCATCAATTCTCAAACTCCTATCGCCTCCTTTTTCAGGACCAACAAGGCCATTGGCTTCTCGCCAAAGATGTCCCATGGAGAACTTTCCTTCACTCTGCGCAGCGTCTCAAACTGCTCCGAACCACCACTACCATCCTATAA 438 0.4817 MDKWDLELGLALPSNSPCAGSNDDMEEEEEEEEEGEKVTHPTLCLLPLTPGHSWRKKRHRMYVKVKMEGVGIARKVDLTMHHSFHTLNHALLHMFGKPPHQFSNSYRLLFQDQQGHWLLAKDVPWRTFLHSAQRLKLLRTTTTIL 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03033 145 PANTHER AUXIN-RESPONSIVE PROTEIN IAA20 56 139 - -
Aip01g03033 145 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 56 139 IPR003311 GO:0005634|GO:0006355
Aip01g03033 145 ProSiteProfiles PB1 domain profile. 60 142 IPR000270 GO:0005515
Aip01g03033 145 SUPERFAMILY CAD & PB1 domains 58 136 - -
Aip01g03033 145 Gene3D - 55 144 - -
Aip01g03033 145 MobiDBLite consensus disorder prediction 11 39 - -
Aip01g03033 145 Pfam AUX/IAA family 40 97 IPR033389 -
Aip01g03033 145 Pfam AUX/IAA family 104 142 IPR033389 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03033 8 135 B3 DNA Binding Superfamily AT3G61830 28.030 3.47e-10 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Aip01g03033 AUX_IAA 6.2e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03033 K14484 - aip:107640278 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03033 01 133385496 133386151 Aip01g03033 01 133385496 133386151 ECH