Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03017 ATGTCGAGCTGCAGCATGGATGCTGGACCTGAGCAACTGTGCTACATACCCTGCAACTTTTGCAACATTGTTCTTGCGGTGAGCGTTCCATGCAGCAGCTTGTTCGACATGGTAACGGTTCGATGCGGTCACTGCACCAATCTCTGGTCCGTAAACATGGCTGCGGCCTTTCAATCACTCTCATGGCAAGATCTTCAGGGTTTCTGCGATGTTGTTATTTATTCCTTTTGA 231 0.4892 MSSCSMDAGPEQLCYIPCNFCNIVLAVSVPCSSLFDMVTVRCGHCTNLWSVNMAAAFQSLSWQDLQGFCDVVIYSF 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03017 76 Pfam YABBY protein 10 65 IPR006780 GO:0007275
Aip01g03017 76 PANTHER AXIAL REGULATOR YABBY 5 1 67 - -
Aip01g03017 76 PANTHER PROTEIN YABBY 6-RELATED 1 67 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03017 Aip-Chr1 133108072 133109316 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03017 11 67 C2C2-YABBY Transcription Factor Family AT2G26580 84.211 3.83e-32 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Aip01g03017 YABBY 1.8e-25 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03017 K25796 - gmx:100499942 139.428