Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03005 ATGAAGCCTATTCCTTCTCAGAATCTCAGGCTTCTTCTTCTTCTTGAGGCTTCCGAGCGCTGCGAACACGAAGGGGCTGTTTATGACCGGCGCTGTGGTTCAGTTTCTGGAAGGAGAACTTCTCATAGTGTGTTTGTATTCCAATCCAGGTGGACGCTTTGCCTCAAGGGAAAAAATGAGCCTTCTAAAGAACTGCCGAAGTTTTCTGTCAAACTTTTTCTTCATTCCAGTGGGCATGTTGCAGCGAAATTCCAATATGACCAGGTTTCACATGCTTACTTCATCAAGAGTATTGAACTTTATATTTCTATTGAAAATTTTGAATTTTCCATAATTAGGGGCTATGTCTTTGACCTTGAACAAGTTCCTGCATACTCATGCTTTATAGGCTATGTTATGGCAGCAGAGAAGGTTCTAGGAGAAATATCTAATTATAAAGTTCAGTTGGAGGCGGTAAAAGCCAAAATCAAGTCTGCTAAATCAAAAGATGAGTCTGAATCTCTTAAATTTACTCAAAAGAAACTGATTAACAAGGCAGGTTGCAAGTTTCTTATATTTGCGCACCATCAGCCAATGATAGATGCGATACATGAGTGCCTTCTTAAGAAAAAAGTGGGTTGCATCTGGATTGATGGAGGTACACCCGCTGCATCAAGGCAACAATTGGTTACAGATTTCCAGGAAAAGGATTATATCAAGGCAGCTGTACTATCCATTAAAGCGGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTACAGAACAATCCTGGACTCCAGGTGACCTAATTCAGGCCAAAGATCGTGCATATAGAATTGGTCAGTTGGTAAATGATACATTTGGGATGTGGTGCAATTCAAACCGGATAATTTGGGGGCAGATGTTAGATGCCCATGAGAACACCTTAGCTGTGTCAAATAATCAGCCATTGAGTATCCCTCCAAAGCATACTACTATTGGGCATAGCCCTTCAAAGCAGAGAACTCTTGACCAGTTTGTCAGAAGATGTGATAACGTGGATAGGTCGGAAGTCGGAACATCATCCTGA 1059 0.4136 MKPIPSQNLRLLLLLEASERCEHEGAVYDRRCGSVSGRRTSHSVFVFQSRWTLCLKGKNEPSKELPKFSVKLFLHSSGHVAAKFQYDQVSHAYFIKSIELYISIENFEFSIIRGYVFDLEQVPAYSCFIGYVMAAEKVLGEISNYKVQLEAVKAKIKSAKSKDESESLKFTQKKLINKAGCKFLIFAHHQPMIDAIHECLLKKKVGCIWIDGGTPAASRQQLVTDFQEKDYIKAAVLSIKAGGVGLTLTAASTVIFTEQSWTPGDLIQAKDRAYRIGQLVNDTFGMWCNSNRIIWGQMLDAHENTLAVSNNQPLSIPPKHTTIGHSPSKQRTLDQFVRRCDNVDRSEVGTSS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03005 352 Coils Coil 135 162 - -
Aip01g03005 352 Gene3D - 123 284 IPR027417 -
Aip01g03005 352 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 132 339 - -
Aip01g03005 352 SMART helicmild6 194 277 IPR001650 -
Aip01g03005 352 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 171 322 IPR001650 -
Aip01g03005 352 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 132 339 IPR030101 GO:0006281|GO:0031297|GO:0036310
Aip01g03005 352 CDD SF2_C_SNF 178 278 - -
Aip01g03005 352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 279 IPR027417 -
Aip01g03005 352 Pfam Helicase conserved C-terminal domain 177 277 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03005 Aip-Chr1 132960325 132963759 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03005 153 278 RAD5 or RAD16-like Gene Family AT1G05120 30.709 1.77e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03005 K14440 - adu:107484479 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03005 01 132960325 132963759 Aip01g03005 01 132960325 132963759 ECH