Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03004 ATGGAGGTACACCCGCTGCATCAAGGCAACAATTGGTTACAGATTTCCAGGAAAAGGATTATATCAAGGCAGCTGCACTATGGTGCTATCCATTATAAAGCGGGAGGAGTTGAATTAACTTTAACTGCTGCAAGCTCAGTTATCTTTACAGAACAATCCTGGACTCCAGGTGACCTAATTCAGGCCAAAGATCGTGCTCATAGAATTGGTCAGGGATGGTGCAATTCAAACTGGATAATTTGGGGCAGATGA 252 0.4365 MEVHPLHQGNNWLQISRKRIISRQLHYGAIHYKAGGVELTLTAASSVIFTEQSWTPGDLIQAKDRAHRIGQGWCNSNWIIWGR 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03004 83 Gene3D - 28 72 IPR027417 -
Aip01g03004 83 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 31 71 - -
Aip01g03004 83 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 72 IPR027417 -
Aip01g03004 83 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 31 71 IPR030101 GO:0006281|GO:0031297|GO:0036310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03004 Aip-Chr1 132827223 132828040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g03004 33 71 RAD5 or RAD16-like Gene Family AT1G02670 56.410 4.62e-08 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03004 K14440 - aip:107639796 141.354