Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03000 atgatTTCACCAAAGGACACAGCAAAGCCACGTCAAAATGATGCTTCTTCACCTACAAGTAACGGTGCTGCTTCCAATTCGAAACCTTGTTCACGAGGAAGGAGGACTTTAACTGTTCCAAAGGAACCAAAGTTTCATAGTCTCCATGTGATATCTGTTAAAGTAATTAGGAATAAGCAAACTAGTCAATCCGAGGGTTATGGGTTTATTGAGTTTACAAGCCGTGCTGCTGCTGAGAGAATACTACAATCATTCAATGGCGCCCTTATGCCAAATGGCGAGCAAGATTTCAGGTTGAACTGGGCAACCTTTAGCGCTGGCGCGAGAGGCGTCATGATGACAGTCCATATTACACTATATTTGTTGGAGATTTGGCTGCAGATGTTACGGACCACCACCTTCAGGAGACATTTAGGGGTAGATATTCCTCGGTTAAGGGGCTTAAAAGAAAGGCAGTTTACGAGAAAAGAAATGGTAGAAGTGCTAGTGCAGTTAAGAAAAGATAACACAGAGGAGATTGAAGGAAGCTGCTGA 534 0.4307 MISPKDTAKPRQNDASSPTSNGAASNSKPCSRGRRTLTVPKEPKFHSLHVISVKVIRNKQTSQSEGYGFIEFTSRAAAERILQSFNGALMPNGEQDFRLNWATFSAGARGVMMTVHITLYLLEIWLQMLRTTTFRRHLGVDIPRLRGLKERQFTRKEMVEVLVQLRKDNTEEIEGSC 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03000 177 MobiDBLite consensus disorder prediction 9 33 - -
Aip01g03000 177 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 104 IPR000504 GO:0003723
Aip01g03000 177 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 91 IPR000504 GO:0003723
Aip01g03000 177 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 47 115 - -
Aip01g03000 177 SUPERFAMILY RNA-binding domain, RBD 49 104 IPR035979 GO:0003676
Aip01g03000 177 MobiDBLite consensus disorder prediction 1 39 - -
Aip01g03000 177 CDD RRM1_SECp43_like 45 105 - -
Aip01g03000 177 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 47 115 - -
Aip01g03000 177 Gene3D - 44 103 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03000 Aip-Chr1 132518584 132521067 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03000 - - aprc:113864230 108.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03000 01 132518584 132521067 Aip04g00483 04 5632844 5636674 PCT